Detail Information

Basic Information:


  VIRBase ID:  

HHID00109190

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548am-5p:           FEM1C:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548am-5p FEM1C
miRBase
Accession/Entrez ID		 MIMAT0022740 56929
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - EUROIMAGE686608//EUROIMAGE783647//FEM1A

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548am-5p
rs1023899452 chrX:16627065    G/T
rs1319380894 chrX:16627063    C/G
rs181147953 chrX:16627076    T/G
rs768483765 chrX:16627055    G/A

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FEM1C
chr5:114856756-114856757(-) m6A 3'UTR       27773535
chr5:114856829-114856830(-) m6A 3'UTR       27773535
chr5:114856862-114856863(-) m6A 3'UTR       27773535
chr5:114858758-114858759(-) m6A 3'UTR       27773535
chr5:114859517-114859518(-) m6A 3'UTR       27773535
chr5:114859526-114859527(-) m6A 3'UTR       27773535
chr5:114859546-114859547(-) m6A 3'UTR       27773535
chr5:114860027-114860028(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr5:114860175-114860176(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:114860185-114860186(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:114860233-114860234(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:114860284-114860285(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:114860386-114860387(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:114860456-114860457(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:114860473-114860474(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:114860478-114860479(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:114860577-114860578(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:114860694-114860695(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:114860809-114860810(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:114860950-114860951(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:114860987-114860988(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:114861000-114861001(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:114861017-114861018(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:114861037-114861038(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:114861088-114861089(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:114861134-114861135(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:114861143-114861144(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:114861271-114861272(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:114878710-114878711(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr5:114878753-114878754(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr5:114878779-114878780(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr5:114878908-114878909(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr5:114878952-114878953(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:114879075-114879076(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:114879145-114879146(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:114879177-114879178(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:114879195-114879196(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:114879243-114879244(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:114879284-114879285(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:114879336-114879337(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:114880234-114880235(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536//22608085
chr5:114880267-114880268(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536
chr5:114880294-114880295(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536
chr5:114880385-114880386(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548am-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Urine     -
FEM1C
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548am-5p
Interactor2: FEM1C

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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