Detail Information

Basic Information:


  VIRBase ID:  

HHID00109186

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548am-5p:           SPATA6L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548am-5p SPATA6L
miRBase
Accession/Entrez ID		 MIMAT0022740 55064
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - bA6J24.2//C9orf68

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548am-5p
rs1023899452 chrX:16627065    G/T
rs1319380894 chrX:16627063    C/G
rs181147953 chrX:16627076    T/G
rs768483765 chrX:16627055    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SPATA6L
chr9:4643172(-) A-I      intronic
chr9:4643129(-) A-I      intronic
chr9:4643113(-) A-I      intronic
chr9:4647577(-) A-I      intronic
chr9:4647546(-) A-I      intronic
chr9:4647506(-) A-I      intronic
chr9:4648126(-) A-I      intronic
chr9:4616714(-) A-I      intronic
chr9:4613877(-) A-I      intronic
chr9:4613752(-) A-I      intronic
chr9:4613128(-) A-I      intronic
chr9:4613070(-) A-I      intronic
chr9:4648013(-) A-I      intronic
chr9:4647492(-) A-I      intronic
chr9:4648023(-) A-I      intronic
chr9:4656267(-) A-I      intronic
chr9:4616779(-) A-I      intronic
chr9:4653855(-) A-I      intronic
chr9:4653880(-) A-I      intronic
chr9:4648028(-) A-I      intronic
chr9:4647973(-) A-I      intronic
chr9:4643207(-) A-I      intronic
chr9:4641935(-) A-I      intronic
chr9:4650895(-) A-I      intronic
chr9:4653842(-) A-I      intronic
chr9:4656405(-) A-I      intronic
chr9:4643145(-) A-I      intronic
chr9:4650727(-) A-I      intronic
chr9:4643273(-) A-I      intronic
chr9:4652729(-) A-I      intronic
chr9:4651112(-) A-I      intronic
chr9:4647480(-) A-I      intronic
chr9:4613676(-) A-I      intronic
chr9:4647903(-) A-I      intronic
chr9:4650896(-) A-I      intronic
chr9:4643278(-) A-I      intronic
chr9:4643994(-) A-I      intronic
chr9:4644142(-) A-I      intronic
chr9:4647335(-) A-I      intronic
chr9:4650774(-) A-I      intronic
chr9:4643822(-) A-I      intronic
chr9:4653807(-) A-I      intronic
chr9:4612143(-) A-I      intronic
chr9:4650797(-) A-I      intronic
chr9:4643146(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SPATA6L
chr9:4600678-4600679(-) m6A 3'UTR       27773535
chr9:4600683-4600684(-) m6A 3'UTR       27773535
chr9:4600731-4600732(-) m6A 3'UTR       27773535
chr9:4600758-4600759(-) m6A 3'UTR       24981863//27773535
chr9:4663234-4663235(-) m6A exon//intron       24284625//24981863//27773535//22608085
chr9:4663293-4663294(-) m6A exon//intron       24284625//24981863//27773535//22575960//22608085
chr9:4663301-4663302(-) m6A exon//intron       24284625//24981863//27773535//22575960//22608085
chr9:4663348-4663349(-) m6A exon//intron       24284625//25456834//24981863//27773535//22575960//22608085
chr9:4663389-4663390(-) m6A exon//intron       24284625//25456834//24981863//22575960//22608085
chr9:4666323-4666324(-) m6A 5'UTR//exon//intron       24981863//22608085
chr9:4666348-4666349(-) m6A 5'UTR//exon//intron       24981863
chr9:4666367-4666368(-) m6A 5'UTR//exon//intron       24981863
chr9:4666380-4666381(-) m6A 5'UTR//exon//intron       24981863
chr9:4666407-4666408(-) m6A 5'UTR//exon//intron       24981863
chr9:4666426-4666427(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548am-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Urine     -
SPATA6L
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548am-5p
Interactor2: SPATA6L

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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