Basic Information:

  VIRBase ID:  

HHID00109157

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548am-5p:  MIMAT0022740          FZD7:  NM_003507     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548am-5p	FZD7
miRBase Accession/Entrez ID	MIMAT0022740	8324
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	FzE3

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548am-5p	rs1023899452 chrX:16627065    G/T rs1319380894 chrX:16627063    C/G rs181147953 chrX:16627076    T/G rs768483765 chrX:16627055    G/A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FZD7	chr2:202899377-202899378(+) m6A CDS       25456834//24981863//22608085 chr2:202899503-202899504(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:202899545-202899546(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:202899562-202899563(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:202899593-202899594(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:202899660-202899661(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr2:202899776-202899777(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr2:202899818-202899819(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr2:202899860-202899861(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr2:202899929-202899930(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr2:202900074-202900075(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:202900202-202900203(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:202900301-202900302(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:202900546-202900547(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:202900583-202900584(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:202900734-202900735(+) m6A CDS       24284625//22608085 chr2:202900750-202900751(+) m6A CDS       24284625 chr2:202901026-202901027(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:202901058-202901059(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:202901083-202901084(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:202901163-202901164(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:202901273-202901274(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:202901316-202901317(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:202901393-202901394(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:202901403-202901404(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:202901442-202901443(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr2:202901485-202901486(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr2:202901586-202901587(+) m6A 3'UTR       24284625//25456834//24981863 chr2:202901613-202901614(+) m6A 3'UTR       24284625 chr2:202901647-202901648(+) m6A 3'UTR       24284625 chr2:202901932-202901933(+) m6A 3'UTR       24981863 chr2:202902534-202902535(+) m6A 3'UTR       24981863 chr2:202902577-202902578(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548am-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Urine     -
	FZD7	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548am-5p
Interactor2: FZD7

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.