Basic Information:

  VIRBase ID:  

HHID00109134

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548am-5p:  MIMAT0022740          ADGRB3:  NM_001704     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548am-5p	ADGRB3
miRBase Accession/Entrez ID	MIMAT0022740	577
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	BAI3

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548am-5p	rs1023899452 chrX:16627065    G/T rs1319380894 chrX:16627063    C/G rs181147953 chrX:16627076    T/G rs768483765 chrX:16627055    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ADGRB3	chr6:69578153(+) A-I      intronic chr6:69588855(+) A-I      intronic chr6:69567736(+) A-I      intronic chr6:69567735(+) A-I      intronic chr6:69566185(+) A-I      intronic chr6:69569102(+) A-I      intronic chr6:69523568(+) A-I      intronic chr6:69567848(+) A-I      intronic chr6:69567869(+) A-I      intronic chr6:69567870(+) A-I      intronic chr6:69569525(+) A-I      intronic chr6:69569546(+) A-I      intronic chr6:69817516(+) A-I      intronic chr6:69569631(+) A-I      intronic chr6:69576105(+) A-I      intronic chr6:69577995(+) A-I      intronic chr6:69569361(+) A-I      intronic chr6:69568759(+) A-I      intronic chr6:69568973(+) A-I      intronic chr6:69569103(+) A-I      intronic chr6:69569184(+) A-I      intronic chr6:69567805(+) A-I      intronic chr6:69567814(+) A-I      intronic chr6:69567821(+) A-I      intronic chr6:69817561(+) A-I      intronic chr6:69569559(+) A-I      intronic chr6:69355682(+) A-I      intronic chr6:69356213(+) A-I      intronic chr6:69391314(+) A-I      intronic chr6:69386176(+) A-I      intronic chr6:69386190(+) A-I      intronic chr6:69815807(+) A-I      intronic chr6:69815843(+) A-I      intronic chr6:69815856(+) A-I      intronic chr6:69665604(+) A-I      intronic chr6:69665605(+) A-I      intronic chr6:69416882(+) A-I      intronic chr6:69665570(+) A-I      intronic chr6:69473083(+) A-I      intronic chr6:69473815(+) A-I      intronic chr6:69664780(+) A-I      intronic chr6:69473039(+) A-I      intronic chr6:69356385(+) A-I      intronic chr6:69356384(+) A-I      intronic chr6:69356207(+) A-I      intronic chr6:69905164(+) A-I      intronic chr6:69521461(+) A-I      intronic chr6:69473082(+) A-I      intronic chr6:69521473(+) A-I      intronic chr6:69355621(+) A-I      intronic chr6:69883007(+) A-I      intronic chr6:69882978(+) A-I      intronic chr6:69882477(+) A-I      intronic chr6:69816003(+) A-I      intronic chr6:69815889(+) A-I      intronic chr6:69815983(+) A-I      intronic chr6:69882332(+) A-I      intronic chr6:69665564(+) A-I      intronic chr6:70063884(+) A-I      intronic chr6:69816001(+) A-I      intronic chr6:69391305(+) A-I      intronic chr6:69883192(+) A-I      intronic chr6:69353570(+) A-I      intronic chr6:69353704(+) A-I      intronic chr6:69815993(+) A-I      intronic chr6:69356294(+) A-I      intronic chr6:69356217(+) A-I      intronic chr6:69539241(+) A-I      intronic chr6:69762042(+) A-I      intronic chr6:69817634(+) A-I      intronic chr6:69920867(+) A-I      intronic chr6:69413789(+) A-I      intronic chr6:69817566(+) A-I      intronic chr6:69568063(+) A-I      intronic chr6:69920537(+) A-I      intronic chr6:69817609(+) A-I      intronic chr6:69817567(+) A-I      intronic chr6:69386204(+) A-I      intronic chr6:70085781(+) A-I      intronic chr6:69815907(+) A-I      intronic chr6:69355665(+) A-I      intronic chr6:69817617(+) A-I      intronic chr6:69395703(+) A-I      intronic chr6:69817578(+) A-I      intronic chr6:70061090(+) A-I      intronic chr6:69392731(+) A-I      intronic chr6:69355645(+) A-I      intronic chr6:69817562(+) A-I      intronic chr6:69817651(+) A-I      intronic chr6:69756879(+) A-I      intronic chr6:69817517(+) A-I      intronic chr6:69883130(+) A-I      intronic chr6:69817649(+) A-I      intronic chr6:69817582(+) A-I      intronic chr6:70061066(+) A-I      intronic chr6:69817545(+) A-I      intronic chr6:69817673(+) A-I      intronic chr6:69353763(+) A-I      intronic chr6:69356248(+) A-I      intronic chr6:69386203(+) A-I      intronic chr6:69660085(+) A-I      intronic chr6:69817580(+) A-I      intronic chr6:69473818(+) A-I      intronic chr6:69473764(+) A-I      intronic chr6:69386306(+) A-I      intronic chr6:69817512(+) A-I      intronic chr6:69817560(+) A-I      intronic chr6:69707306(+) A-I      intronic chr6:69822924(+) A-I      intronic chr6:70086134(+) A-I      intronic chr6:69665503(+) A-I      intronic chr6:69515022(+) A-I      intronic chr6:69883069(+) A-I      intronic chr6:69386106(+) A-I      intronic chr6:70085785(+) A-I      intronic chr6:69387632(+) A-I      intronic chr6:69815794(+) A-I      intronic chr6:69462308(+) A-I      intronic chr6:69741725(+) A-I      intronic chr6:69741687(+) A-I      intronic chr6:69811954(+) A-I      intronic chr6:69356249(+) A-I      intronic chr6:69779503(+) A-I      intronic chr6:70043662(+) A-I      intronic chr6:69356159(+) A-I      intronic chr6:69920899(+) A-I      intronic chr6:69815917(+) A-I      intronic chr6:69416748(+) A-I      intronic chr6:69386163(+) A-I      intronic chr6:69753845(+) A-I      intronic chr6:69355839(+) A-I      intronic chr6:69592885(+) A-I      intronic chr6:69511488(+) A-I      intronic chr6:69395546(+) A-I      intronic chr6:69356289(+) A-I      intronic chr6:69613748(+) A-I      intronic chr6:69882456(+) A-I      intronic chr6:69473811(+) A-I      intronic chr6:69387539(+) A-I      intronic chr6:69355833(+) A-I      intronic chr6:69665616(+) A-I      intronic chr6:70035938(+) A-I      intronic chr6:69515015(+) A-I      intronic chr6:69933729(+) A-I      intronic chr6:69392859(+) A-I      intronic chr6:69356208(+) A-I      intronic chr6:69741692(+) A-I      intronic chr6:70086273(+) A-I      intronic chr6:70035933(+) A-I      intronic chr6:69613665(+) A-I      intronic chr6:69741212(+) A-I      intronic chr6:69386130(+) A-I      intronic chr6:69386240(+) A-I      intronic chr6:69822789(+) A-I      intronic chr6:69920557(+) A-I      intronic chr6:69707280(+) A-I      intronic chr6:69815772(+) A-I      intronic chr6:69386184(+) A-I      intronic chr6:69356283(+) A-I      intronic chr6:69815765(+) A-I      intronic chr6:69356183(+) A-I      intronic chr6:69630321(+) A-I      intronic chr6:69741078(+) A-I      intronic chr6:69416856(+) A-I      intronic chr6:69515107(+) A-I      intronic chr6:69387559(+) A-I      intronic chr6:69822698(+) A-I      intronic chr6:69355704(+) A-I      intronic chr6:69391311(+) A-I      intronic chr6:69665496(+) A-I      intronic chr6:69391393(+) A-I      intronic chr6:69822713(+) A-I      intronic chr6:70085715(+) A-I      intronic chr6:69473709(+) A-I      intronic chr6:69779416(+) A-I      intronic chr6:69684382(+) A-I      intronic chr6:69741701(+) A-I      intronic chr6:69387510(+) A-I      intronic chr6:69353663(+) A-I      intronic chr6:69473880(+) A-I      intronic chr6:69473891(+) A-I      intronic chr6:70086083(+) A-I      intronic chr6:69473844(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ADGRB3	chr6:69348646-69348647(+) m6A CDS       22608085 chr6:69348718-69348719(+) m6A CDS       24981863//22608085 chr6:69348727-69348728(+) m6A CDS       24981863//22608085 chr6:69348796-69348797(+) m6A CDS       22608085 chr6:69349122-69349123(+) m6A CDS       22608085 chr6:70071002-70071003(+) m6A CDS       22608085 chr6:70071048-70071049(+) m6A CDS       22608085 chr6:70071164-70071165(+) m6A CDS       22608085 chr6:70071201-70071202(+) m6A CDS       22608085 chr6:70071234-70071235(+) m6A CDS       22575960//22608085 chr6:70071249-70071250(+) m6A CDS       22575960//22608085 chr6:70071277-70071278(+) m6A CDS       22608085 chr6:70071301-70071302(+) m6A CDS       22608085 chr6:70071355-70071356(+) m6A CDS       22608085 chr6:70071371-70071372(+) m6A CDS       22608085 chr6:70098598-70098599(+) m6A CDS       22608085 chr6:70098610-70098611(+) m6A CDS       22608085 chr6:70098625-70098626(+) m6A CDS       22608085 chr6:70098637-70098638(+) m6A CDS       22608085 chr6:70098679-70098680(+) m6A CDS       22608085 chr6:70098704-70098705(+) m6A CDS       22608085 chr6:70098771-70098772(+) m6A CDS       22608085 chr6:70098797-70098798(+) m6A 3'UTR       22608085 chr6:70098809-70098810(+) m6A 3'UTR       22608085 chr6:70098814-70098815(+) m6A 3'UTR       22608085 chr6:70098837-70098838(+) m6A 3'UTR       22608085 chr6:70098865-70098866(+) m6A 3'UTR       22608085 chr6:70098889-70098890(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548am-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Urine     -
	ADGRB3	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548am-5p
Interactor2: ADGRB3

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.