Basic Information:

  VIRBase ID:  

HHID00109122

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548o-5p:  MIMAT0022738          CCNY:  NM_145012     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548o-5p	CCNY
miRBase Accession/Entrez ID	MIMAT0022738	219771
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C10orf9//CBCP1//CCNX//CFP1

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548o-5p	rs748987263 chr20:38516580    C/A rs748987263 chr20:38516580    C/T rs750604040 chr20:38516581    G/A rs1186654040 chr20:38516574    T/G rs1299647098 chr20:38516572    A/T rs1379757384 chr20:38516576    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCNY	chr10:35701601(+) A-I      intronic chr10:35823136(+) A-I      intronic chr10:35642998(+) A-I      intronic chr10:35629634(+) A-I      intronic chr10:35632447(+) A-I      intronic chr10:35632501(+) A-I      intronic chr10:35644551(+) A-I      intronic chr10:35749272(+) A-I      intronic chr10:35749285(+) A-I      intronic chr10:35749289(+) A-I      intronic chr10:35749274(+) A-I      intronic chr10:35749296(+) A-I      intronic chr10:35749299(+) A-I      intronic chr10:35749302(+) A-I      intronic chr10:35749311(+) A-I      intronic chr10:35749315(+) A-I      intronic chr10:35644555(+) A-I      intronic chr10:35701583(+) A-I      intronic chr10:35701593(+) A-I      intronic chr10:35642089(+) A-I      intronic chr10:35642107(+) A-I      intronic chr10:35749293(+) A-I      intronic chr10:35778368(+) A-I      intronic chr10:35778358(+) A-I      intronic chr10:35778022(+) A-I      intronic chr10:35819867(+) A-I      intronic chr10:35727206(+) A-I      intronic chr10:35643347(+) A-I      intronic chr10:35727202(+) A-I      intronic chr10:35712343(+) A-I      intronic chr10:35722722(+) A-I      intronic chr10:35846557(+) A-I      intronic chr10:35830373(+) A-I      intronic chr10:35722717(+) A-I      intronic chr10:35722018(+) A-I      intronic chr10:35828665(+) A-I      intronic chr10:35644485(+) A-I      intronic chr10:35722011(+) A-I      intronic chr10:35828647(+) A-I      intronic chr10:35828621(+) A-I      intronic chr10:35713284(+) A-I      intronic chr10:35701554(+) A-I      intronic chr10:35819894(+) A-I      intronic chr10:35722800(+) A-I      intronic chr10:35713255(+) A-I      intronic chr10:35785481(+) A-I      intronic chr10:35713235(+) A-I      intronic chr10:35698880(+) A-I      intronic chr10:35698726(+) A-I      intronic chr10:35659160(+) A-I      intronic chr10:35659154(+) A-I      intronic chr10:35659141(+) A-I      intronic chr10:35644593(+) A-I      intronic chr10:35742054(+) A-I      intronic chr10:35644576(+) A-I      intronic chr10:35644531(+) A-I      intronic chr10:35785504(+) A-I      intronic chr10:35649314(+) A-I      intronic chr10:35644512(+) A-I      intronic chr10:35644450(+) A-I      intronic chr10:35644428(+) A-I      intronic chr10:35846573(+) A-I      intronic chr10:35644393(+) A-I      intronic chr10:35599973(+) A-I      intronic chr10:35591151(+) A-I      intronic chr10:35591125(+) A-I      intronic chr10:35580610(+) A-I      intronic chr10:35580594(+) A-I      intronic chr10:35705272(+) A-I      intronic chr10:35550770(+) A-I      intronic chr10:35550764(+) A-I      intronic chr10:35701588(+) A-I      intronic chr10:35644391(+) A-I      intronic chr10:35644371(+) A-I      intronic chr10:35726396(+) A-I      intronic chr10:35644359(+) A-I      intronic chr10:35597280(+) A-I      intronic chr10:35819818(+) A-I      intronic chr10:35641983(+) A-I      intronic chr10:35635654(+) A-I      intronic chr10:35727154(+) A-I      intronic chr10:35846563(+) A-I      intronic chr10:35698923(+) A-I      intronic chr10:35643322(+) A-I      intronic chr10:35634250(+) A-I      intronic chr10:35819893(+) A-I      intronic chr10:35845873(+) A-I      intronic chr10:35830596(+) A-I      intronic chr10:35633417(+) A-I      intronic chr10:35629684(+) A-I      intronic chr10:35819804(+) A-I      intronic chr10:35698762(+) A-I      intronic chr10:35700351(+) A-I      intronic chr10:35629667(+) A-I      intronic chr10:35629562(+) A-I      intronic chr10:35670233(+) A-I      intronic chr10:35629559(+) A-I      intronic chr10:35597299(+) A-I      intronic chr10:35719829(+) A-I      intronic chr10:35629533(+) A-I      intronic chr10:35778404(+) A-I      intronic chr10:35629558(+) A-I      intronic chr10:35634379(+) A-I      intronic chr10:35845957(+) A-I      intronic chr10:35726395(+) A-I      intronic chr10:35644405(+) A-I      intronic chr10:35608640(+) A-I      intronic chr10:35712134(+) A-I      intronic chr10:35722806(+) A-I      intronic chr10:35722091(+) A-I      intronic chr10:35649259(+) A-I      intronic chr10:35659341(+) A-I      intronic chr10:35597319(+) A-I      intronic chr10:35643314(+) A-I      intronic chr10:35635684(+) A-I      intronic chr10:35641996(+) A-I      intronic chr10:35726502(+) A-I      intronic chr10:35730573(+) A-I      intronic chr10:35727203(+) A-I      intronic chr10:35659353(+) A-I      intronic chr10:35601221(+) A-I      intronic chr10:35634282(+) A-I      intronic chr10:35727141(+) A-I      intronic chr10:35778435(+) A-I      intronic chr10:35644527(+) A-I      intronic chr10:35537422(+) A-I      intronic chr10:35698871(+) A-I      intronic chr10:35778394(+) A-I      intronic chr10:35644459(+) A-I      intronic chr10:35705271(+) A-I      intronic chr10:35635667(+) A-I      intronic chr10:35634286(+) A-I      intronic chr10:35722017(+) A-I      intronic chr10:35644350(+) A-I      intronic chr10:35845817(+) A-I      intronic chr10:35700186(+) A-I      intronic chr10:35642090(+) A-I      intronic chr10:35670358(+) A-I      intronic chr10:35644472(+) A-I      intronic chr10:35698804(+) A-I      intronic chr10:35700304(+) A-I      intronic chr10:35778410(+) A-I      intronic chr10:35712282(+) A-I      intronic chr10:35564177(+) A-I      intronic chr10:35698741(+) A-I      intronic chr10:35643231(+) A-I      intronic chr10:35823003(+) A-I      intronic chr10:35698776(+) A-I      intronic chr10:35643243(+) A-I      intronic chr10:35700353(+) A-I      intronic chr10:35537423(+) A-I      intronic chr10:35785503(+) A-I      intronic chr10:35700294(+) A-I      intronic chr10:35727216(+) A-I      intronic chr10:35641877(+) A-I      intronic chr10:35633432(+) A-I      intronic chr10:35727218(+) A-I      intronic chr10:35726367(+) A-I      intronic chr10:35643280(+) A-I      intronic chr10:35641885(+) A-I      intronic chr10:35641893(+) A-I      intronic chr10:35742048(+) A-I      intronic chr10:35727140(+) A-I      intronic chr10:35730565(+) A-I      intronic chr10:35727146(+) A-I      intronic chr10:35726461(+) A-I      intronic chr10:35643348(+) A-I      intronic chr10:35727252(+) A-I      intronic chr10:35641957(+) A-I      intronic chr10:35643216(+) A-I      intronic chr10:35727156(+) A-I      intronic chr10:35698860(+) A-I      intronic chr10:35845912(+) A-I      intronic chr10:35708003(+) A-I      intronic chr10:35643279(+) A-I      intronic chr10:35537495(+) A-I      intronic chr10:35598506(+) A-I      intronic chr10:35703173(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCNY	chr10:35606118(+) T-C intron -    22484847 chr10:35606169(+) T-C intron -    22484847 chr10:35606185(+) T-C intron -    22484847 chr10:35606973(+) T-C intron -    22484847 chr10:35607061(+) T-C intron -    22484847 chr10:35614203(+) T-C intron -    22484847 chr10:35614958(+) T-C intron -    22484847 chr10:35614960(+) T-C intron -    22484847 chr10:35614966(+) T-C intron -    22484847 chr10:35700304(+) A-G intron -    22484847 chr10:35727146(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCNY	chr10:35625937-35625938(+) m6A 5'UTR//intron       24209618 chr10:35625946-35625947(+) m6A 5'UTR//intron       24209618 chr10:35625988-35625989(+) m6A 5'UTR//CDS//exon//intron       24209618 chr10:35772337-35772338(+) m6A 5'UTR//CDS//exon//intron       24981863 chr10:35855128-35855129(+) m6A exon//intron       - chr10:35858003-35858004(+) m6A CDS       24209618//24981863 chr10:35858015-35858016(+) m6A CDS       24209618//24981863//22608085 chr10:35858054-35858055(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:35858157-35858158(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr10:35858161-35858162(+) m6A 3'UTR       - chr10:35858337-35858338(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr10:35858510-35858511(+) m6A 3'UTR       24209618//24981863 chr10:35858791-35858792(+) m6A 3'UTR       24981863 chr10:35858832-35858833(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548o-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	CCNY	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548o-5p
Interactor2: CCNY

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.