Detail Information

Basic Information:


  VIRBase ID:  

HHID00109104

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548o-5p:           TTC13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548o-5p TTC13
miRBase
Accession/Entrez ID		 MIMAT0022738 79573
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548o-5p
rs748987263 chr20:38516580    C/A
rs748987263 chr20:38516580    C/T
rs750604040 chr20:38516581    G/A
rs1186654040 chr20:38516574    T/G
rs1299647098 chr20:38516572    A/T
rs1379757384 chr20:38516576    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TTC13
chr1:231045994(-) A-I      intronic
chr1:231084374(-) A-I      intronic
chr1:231094520(-) A-I      intronic
chr1:231084296(-) A-I      intronic
chr1:231065071(-) A-I      intronic
chr1:231077165(-) A-I      intronic
chr1:231065129(-) A-I      intronic
chr1:231065133(-) A-I      intronic
chr1:231065199(-) A-I      intronic
chr1:231077322(-) A-I      intronic
chr1:231070977(-) A-I      intronic
chr1:231077096(-) A-I      intronic
chr1:231094519(-) A-I      intronic
chr1:231065146(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TTC13
chr1:231065129(-) A-I intron -    15258596
chr1:231065133(-) A-I intron -    15258596
chr1:231065146(-) A-I intron -    15258596
chr1:231065199(-) A-I intron -    15258596
chr1:231094519(-) A-G intron -    22484847
chr1:231094520(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TTC13
chr1:231048454-231048455(-) m6A CDS//exon       27773535
chr1:231048469-231048470(-) m6A CDS//exon       27773535
chr1:231048475-231048476(-) m6A CDS//exon       27773535
chr1:231051941-231051942(-) m6A CDS//exon       27773535
chr1:231051986-231051987(-) m6A CDS//exon       27773535
chr1:231052010-231052011(-) m6A CDS//exon       27773535
chr1:231060616-231060617(-) m6A CDS       -
chr1:231060638-231060639(-) m6A CDS       -
chr1:231060668-231060669(-) m6A CDS       -
chr1:231071923-231071924(-) m6A CDS//exon//intron       -
chr1:231071933-231071934(-) m6A CDS//exon//intron       -
chr1:231071959-231071960(-) m6A CDS//exon//intron       -
chr1:231071966-231071967(-) m6A CDS//exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548o-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
TTC13
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548o-5p
Interactor2: TTC13

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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