Detail Information

Basic Information:


  VIRBase ID:  

HHID00108627

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:           LRRTM3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548h-5p LRRTM3
miRBase
Accession/Entrez ID		 MIMAT0005928 347731
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548h-5p
rs1423828980 chr14:64095086    C/T
rs144194694 chr14:64095094    G/A
rs377270470 chr14:64095095    C/A
rs377270470 chr14:64095095    C/T
rs573600271 chr14:64095093    C/T
rs1000965353 chr16:11306498    A/G
rs1307745356 chr16:11306500    C/T
rs1353674605 chr16:11306491    G/A
rs1353674605 chr16:11306491    G/T
rs149601213 chr16:11306499    C/T
rs563549339 chr16:11306501    G/A
rs956694910 chr16:11306502    C/T
rs988390663 chr16:11306503    G/A
rs1247348117 chr17:13543606    C/T
rs1307196788 chr17:13543599    CAA/C
rs1341303954 chr17:13543598    A/AAAGTAATAG
rs1348342088 chr17:13543609    G/A
rs9913045 chr17:13543607    G/A
rs1285835311 chr8:27048929    A/G
rs1295636494 chr8:27048928    CA/C
rs1306358433 chr8:27048936    G/A
rs1352583339 chr8:27048937    C/T
rs1354349512 chr8:27048928    C/T
rs1391960313 chr8:27048933    A/C
rs561726723 chr8:27048935    C/T
rs748156409 chr8:27048926    G/A
rs748156409 chr8:27048926    G/T
rs1042357839 chr6:131792184    G/A
rs1225605725 chr6:131792194    T/C
rs1257986495 chr6:131792187    G/A
rs1345907099 chr6:131792186    G/T
rs1466227719 chr6:131792183    C/A
rs1466227719 chr6:131792183    C/T
rs906403807 chr6:131792185    C/A
rs1384709035 chr6:131792178    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LRRTM3
chr10:68725061(+) A-I      intronic
chr10:68725046(+) A-I      intronic
chr10:68725066(+) A-I      intronic
chr10:68725062(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LRRTM3
chr10:68685770-68685771(+) m6A 5'UTR       24981863
chr10:68685785-68685786(+) m6A 5'UTR       24981863
chr10:68685899-68685900(+) m6A 5'UTR       -
chr10:68685919-68685920(+) m6A 5'UTR       -
chr10:68687209-68687210(+) m6A CDS       25456834
chr10:68687225-68687226(+) m6A CDS       25456834
chr10:68687233-68687234(+) m6A CDS       25456834
chr10:68687291-68687292(+) m6A CDS       25456834
chr10:68687300-68687301(+) m6A CDS       25456834
chr10:68687647-68687648(+) m6A CDS       -
chr10:68687743-68687744(+) m6A CDS       -
chr10:68687849-68687850(+) m6A CDS       -
chr10:68687895-68687896(+) m6A CDS       -
chr10:68688071-68688072(+) m6A CDS       25456834
chr10:68688125-68688126(+) m6A CDS       25456834
chr10:68688141-68688142(+) m6A CDS       25456834
chr10:68688170-68688171(+) m6A CDS       25456834
chr10:68772049-68772050(+) m6A exon//intron       25456834
chr10:68857421-68857422(+) m6A CDS//exon       25456834//22575960
chr10:68857473-68857474(+) m6A CDS//exon       25456834//22575960
chr10:68857485-68857486(+) m6A CDS//exon       25456834//22575960
chr10:68857495-68857496(+) m6A CDS//exon       25456834//22575960
chr10:68857538-68857539(+) m6A CDS//exon       25456834//22575960
chr10:68857587-68857588(+) m6A 3'UTR//exon       -
chr10:68857604-68857605(+) m6A 3'UTR//exon       -
chr10:68857633-68857634(+) m6A 3'UTR//exon       -
chr10:68857642-68857643(+) m6A 3'UTR//exon       -
chr10:68857647-68857648(+) m6A 3'UTR//exon       -
chr10:68857652-68857653(+) m6A 3'UTR//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548h-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548h-5p
Interactor2: LRRTM3

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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