Detail Information

Basic Information:


  VIRBase ID:  

HHID00108612

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:           C5orf24:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548h-5p C5orf24
miRBase
Accession/Entrez ID		 MIMAT0005928 134553
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548h-5p
rs1423828980 chr14:64095086    C/T
rs144194694 chr14:64095094    G/A
rs377270470 chr14:64095095    C/A
rs377270470 chr14:64095095    C/T
rs573600271 chr14:64095093    C/T
rs1000965353 chr16:11306498    A/G
rs1307745356 chr16:11306500    C/T
rs1353674605 chr16:11306491    G/A
rs1353674605 chr16:11306491    G/T
rs149601213 chr16:11306499    C/T
rs563549339 chr16:11306501    G/A
rs956694910 chr16:11306502    C/T
rs988390663 chr16:11306503    G/A
rs1247348117 chr17:13543606    C/T
rs1307196788 chr17:13543599    CAA/C
rs1341303954 chr17:13543598    A/AAAGTAATAG
rs1348342088 chr17:13543609    G/A
rs9913045 chr17:13543607    G/A
rs1285835311 chr8:27048929    A/G
rs1295636494 chr8:27048928    CA/C
rs1306358433 chr8:27048936    G/A
rs1352583339 chr8:27048937    C/T
rs1354349512 chr8:27048928    C/T
rs1391960313 chr8:27048933    A/C
rs561726723 chr8:27048935    C/T
rs748156409 chr8:27048926    G/A
rs748156409 chr8:27048926    G/T
rs1042357839 chr6:131792184    G/A
rs1225605725 chr6:131792194    T/C
rs1257986495 chr6:131792187    G/A
rs1345907099 chr6:131792186    G/T
rs1466227719 chr6:131792183    C/A
rs1466227719 chr6:131792183    C/T
rs906403807 chr6:131792185    C/A
rs1384709035 chr6:131792178    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C5orf24
chr5:134185417(+) A-I      intronic
chr5:134183913(+) A-I      intronic
chr5:134184774(+) A-I      intronic
chr5:134183839(+) A-I      intronic
chr5:134184127(+) A-I      intronic
chr5:134184263(+) A-I      intronic
chr5:134189534(+) A-I      intronic
chr5:134188971(+) A-I      intronic
chr5:134183103(+) A-I      intronic
chr5:134184295(+) A-I      intronic
chr5:134183115(+) A-I      intronic
chr5:134189757(+) A-I      intronic
chr5:134189606(+) A-I      intronic
chr5:134189619(+) A-I      intronic
chr5:134183166(+) A-I      intronic
chr5:134189623(+) A-I      intronic
chr5:134189685(+) A-I      intronic
chr5:134189690(+) A-I      intronic
chr5:134183170(+) A-I      intronic
chr5:134189691(+) A-I      intronic
chr5:134184692(+) A-I      intronic
chr5:134185452(+) A-I      intronic
chr5:134185577(+) A-I      intronic
chr5:134185932(+) A-I      intronic
chr5:134186827(+) A-I      intronic
chr5:134188627(+) A-I      intronic
chr5:134188676(+) A-I      intronic
chr5:134183183(+) A-I      intronic
chr5:134183446(+) A-I      intronic
chr5:134183531(+) A-I      intronic
chr5:134183086(+) A-I      intronic
chr5:134188734(+) A-I      intronic
chr5:134184792(+) A-I      intronic
chr5:134188976(+) A-I      intronic
chr5:134188582(+) A-I      intronic
chr5:134184866(+) A-I      intronic
chr5:134184847(+) A-I      intronic
chr5:134183065(+) A-I      intronic
chr5:134184857(+) A-I      intronic
chr5:134187692(+) A-I      intronic
chr5:134185373(+) A-I      intronic
chr5:134189000(+) A-I      intronic
chr5:134184895(+) A-I      intronic
chr5:134183017(+) A-I      intronic
chr5:134183039(+) A-I      intronic
chr5:134183085(+) A-I      intronic
chr5:134188525(+) A-I      intronic
chr5:134184785(+) A-I      intronic
chr5:134185448(+) A-I      intronic
chr5:134184500(+) A-I      intronic
chr5:134186419(+) A-I      intronic
chr5:134185447(+) A-I      intronic
chr5:134186219(+) A-I      intronic
chr5:134183667(+) A-I      intronic
chr5:134184854(+) A-I      intronic
chr5:134184240(+) A-I      intronic
chr5:134189695(+) A-I      intronic
chr5:134183519(+) A-I      intronic
chr5:134189643(+) A-I      intronic
chr5:134188594(+) A-I      intronic
chr5:134186818(+) A-I      intronic
chr5:134183060(+) A-I      intronic
chr5:134185522(+) A-I      intronic
chr5:134192184(+) A-I      3'UTR
chr5:134189639(+) A-I      intronic
chr5:134189518(+) A-I      intronic
chr5:134188601(+) A-I      intronic
chr5:134185490(+) A-I      intronic
chr5:134185988(+) A-I      intronic
chr5:134183571(+) A-I      intronic
chr5:134183851(+) A-I      intronic
chr5:134183151(+) A-I      intronic
chr5:134189301(+) A-I      intronic
chr5:134189302(+) A-I      intronic
chr5:134184114(+) A-I      intronic
chr5:134186828(+) A-I      intronic
chr5:134186017(+) A-I      intronic
chr5:134183535(+) A-I      intronic
chr5:134183880(+) A-I      intronic
chr5:134183182(+) A-I      intronic
chr5:134183007(+) A-I      intronic
chr5:134183849(+) A-I      intronic
chr5:134189649(+) A-I      intronic
chr5:134184900(+) A-I      intronic
chr5:134183825(+) A-I      intronic
chr5:134186894(+) A-I      intronic
chr5:134183006(+) A-I      intronic
chr5:134187700(+) A-I      intronic
chr5:134189676(+) A-I      intronic
chr5:134184441(+) A-I      intronic
chr5:134186280(+) A-I      intronic
chr5:134185477(+) A-I      intronic
chr5:134189548(+) A-I      intronic
chr5:134185968(+) A-I      intronic
chr5:134183490(+) A-I      intronic
chr5:134185465(+) A-I      intronic
chr5:134188551(+) A-I      intronic
chr5:134189517(+) A-I      intronic
chr5:134183090(+) A-I      intronic
chr5:134184865(+) A-I      intronic
chr5:134183890(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C5orf24
chr5:134184864(+) A-I intron -    22327324
chr5:134183006(+) A-G intron -    22484847
chr5:134183060(+) A-G intron -    22484847
chr5:134183090(+) A-G intron -    22484847
chr5:134183444(+) A-G intron -    22484847
chr5:134183519(+) A-G intron -    22484847
chr5:134183571(+) A-G intron -    22484847
chr5:134183791(+) A-G intron -    22484847
chr5:134183825(+) A-G intron -    22484847
chr5:134183838(+) A-G intron -    22484847
chr5:134183842(+) A-G intron -    22484847
chr5:134184780(+) A-G intron -    22484847
chr5:134184785(+) A-G intron -    22484847
chr5:134184864(+) A-G intron -    22484847
chr5:134184894(+) A-G intron -    22484847
chr5:134184901(+) A-G intron -    22484847
chr5:134185447(+) A-G intron -    22484847
chr5:134185448(+) A-G intron -    22484847
chr5:134185490(+) A-G intron -    22484847
chr5:134185939(+) A-G intron -    22484847
chr5:134186419(+) A-G intron -    22484847
chr5:134186828(+) A-G intron -    22484847
chr5:134187700(+) A-G intron -    22484847
chr5:134188525(+) A-G intron -    22484847
chr5:134188551(+) A-G intron -    22484847
chr5:134189302(+) A-G intron -    22484847
chr5:134189695(+) A-G intron -    22484847
chr5:134192096(+) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C5orf24
chr5:134181417-134181418(+) m6A 5'UTR       24981863
chr5:134181704-134181705(+) m6A 5'UTR//intron       24209618//24981863
chr5:134182535-134182536(+) m6A 5'UTR//intron       24284625//24209618//24981863//22608085
chr5:134190736-134190737(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr5:134190759-134190760(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr5:134190773-134190774(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:134190785-134190786(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:134190820-134190821(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:134190875-134190876(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:134190899-134190900(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:134190913-134190914(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:134190923-134190924(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:134190947-134190948(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr5:134190961-134190962(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr5:134190971-134190972(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr5:134191009-134191010(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr5:134191124-134191125(+) m6A CDS//intron       24209618//24981863//22608085
chr5:134191141-134191142(+) m6A CDS//intron       24209618//24981863//22608085
chr5:134193001-134193002(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr5:134193101-134193102(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr5:134193148-134193149(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr5:134193170-134193171(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr5:134193202-134193203(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr5:134193962-134193963(+) m6A 3'UTR       24981863
chr5:134193993-134193994(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548h-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
C5orf24
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548h-5p
Interactor2: C5orf24

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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