Detail Information

Basic Information:


  VIRBase ID:  

HHID00108598

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:           SNX16:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548h-5p SNX16
miRBase
Accession/Entrez ID		 MIMAT0005928 64089
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548h-5p
rs1423828980 chr14:64095086    C/T
rs144194694 chr14:64095094    G/A
rs377270470 chr14:64095095    C/A
rs377270470 chr14:64095095    C/T
rs573600271 chr14:64095093    C/T
rs1000965353 chr16:11306498    A/G
rs1307745356 chr16:11306500    C/T
rs1353674605 chr16:11306491    G/A
rs1353674605 chr16:11306491    G/T
rs149601213 chr16:11306499    C/T
rs563549339 chr16:11306501    G/A
rs956694910 chr16:11306502    C/T
rs988390663 chr16:11306503    G/A
rs1247348117 chr17:13543606    C/T
rs1307196788 chr17:13543599    CAA/C
rs1341303954 chr17:13543598    A/AAAGTAATAG
rs1348342088 chr17:13543609    G/A
rs9913045 chr17:13543607    G/A
rs1285835311 chr8:27048929    A/G
rs1295636494 chr8:27048928    CA/C
rs1306358433 chr8:27048936    G/A
rs1352583339 chr8:27048937    C/T
rs1354349512 chr8:27048928    C/T
rs1391960313 chr8:27048933    A/C
rs561726723 chr8:27048935    C/T
rs748156409 chr8:27048926    G/A
rs748156409 chr8:27048926    G/T
rs1042357839 chr6:131792184    G/A
rs1225605725 chr6:131792194    T/C
rs1257986495 chr6:131792187    G/A
rs1345907099 chr6:131792186    G/T
rs1466227719 chr6:131792183    C/A
rs1466227719 chr6:131792183    C/T
rs906403807 chr6:131792185    C/A
rs1384709035 chr6:131792178    G/A

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNX16
chr8:82711915-82711916(-) m6A 3'UTR       27773535
chr8:82713419-82713420(-) m6A 3'UTR       27773535
chr8:82713640-82713641(-) m6A 3'UTR       24981863//27773535//22608085
chr8:82713648-82713649(-) m6A 3'UTR       24981863//27773535//22608085
chr8:82713655-82713656(-) m6A 3'UTR       24981863//27773535//22608085
chr8:82713702-82713703(-) m6A 3'UTR       27773535//22608085
chr8:82713735-82713736(-) m6A CDS       27773535
chr8:82751903-82751904(-) m6A CDS       24981863//22608085
chr8:82751923-82751924(-) m6A CDS       24981863//22608085
chr8:82751936-82751937(-) m6A CDS       24981863//22608085
chr8:82751946-82751947(-) m6A CDS       24981863//22608085
chr8:82751954-82751955(-) m6A CDS       24981863//22608085
chr8:82751998-82751999(-) m6A CDS//intron       24209618//24981863//22608085
chr8:82752058-82752059(-) m6A CDS//intron       24209618//24981863//22608085
chr8:82752062-82752063(-) m6A CDS//intron       -
chr8:82752084-82752085(-) m6A CDS       -
chr8:82752156-82752157(-) m6A CDS       24284625//27773535//22608085
chr8:82752180-82752181(-) m6A CDS       24284625//27773535//22608085
chr8:82752260-82752261(-) m6A 5'UTR       24284625//24981863//27773535//22608085
chr8:82752454-82752455(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr8:82754052-82754053(-) m6A 5'UTR//intron       -
chr8:82754079-82754080(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548h-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
SNX16
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548h-5p
Interactor2: SNX16

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

Starting a new search, please wait ...