Detail Information

Basic Information:


  VIRBase ID:  

HHID00108590

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:           FIGN:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548h-5p FIGN
miRBase
Accession/Entrez ID		 MIMAT0005928 55137
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548h-5p
rs1423828980 chr14:64095086    C/T
rs144194694 chr14:64095094    G/A
rs377270470 chr14:64095095    C/A
rs377270470 chr14:64095095    C/T
rs573600271 chr14:64095093    C/T
rs1000965353 chr16:11306498    A/G
rs1307745356 chr16:11306500    C/T
rs1353674605 chr16:11306491    G/A
rs1353674605 chr16:11306491    G/T
rs149601213 chr16:11306499    C/T
rs563549339 chr16:11306501    G/A
rs956694910 chr16:11306502    C/T
rs988390663 chr16:11306503    G/A
rs1247348117 chr17:13543606    C/T
rs1307196788 chr17:13543599    CAA/C
rs1341303954 chr17:13543598    A/AAAGTAATAG
rs1348342088 chr17:13543609    G/A
rs9913045 chr17:13543607    G/A
rs1285835311 chr8:27048929    A/G
rs1295636494 chr8:27048928    CA/C
rs1306358433 chr8:27048936    G/A
rs1352583339 chr8:27048937    C/T
rs1354349512 chr8:27048928    C/T
rs1391960313 chr8:27048933    A/C
rs561726723 chr8:27048935    C/T
rs748156409 chr8:27048926    G/A
rs748156409 chr8:27048926    G/T
rs1042357839 chr6:131792184    G/A
rs1225605725 chr6:131792194    T/C
rs1257986495 chr6:131792187    G/A
rs1345907099 chr6:131792186    G/T
rs1466227719 chr6:131792183    C/A
rs1466227719 chr6:131792183    C/T
rs906403807 chr6:131792185    C/A
rs1384709035 chr6:131792178    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FIGN
chr2:164553748(-) A-I      intronic
chr2:164553778(-) A-I      intronic
chr2:164486649(-) A-I      intronic
chr2:164553265(-) A-I      intronic
chr2:164486674(-) A-I      intronic
chr2:164553267(-) A-I      intronic
chr2:164553804(-) A-I      intronic
chr2:164553299(-) A-I      intronic
chr2:164553827(-) A-I      intronic
chr2:164493513(-) A-I      intronic
chr2:164493502(-) A-I      intronic
chr2:164493520(-) A-I      intronic
chr2:164517532(-) A-I      intronic
chr2:164493503(-) A-I      intronic
chr2:164534904(-) A-I      intronic
chr2:164517613(-) A-I      intronic
chr2:164519635(-) A-I      intronic
chr2:164553285(-) A-I      intronic
chr2:164525771(-) A-I      intronic
chr2:164534799(-) A-I      intronic
chr2:164534895(-) A-I      intronic
chr2:164553696(-) A-I      intronic
chr2:164534913(-) A-I      intronic
chr2:164552413(-) A-I      intronic
chr2:164553408(-) A-I      intronic
chr2:164553646(-) A-I      intronic
chr2:164553693(-) A-I      intronic
chr2:164552552(-) A-I      intronic
chr2:164552520(-) A-I      intronic
chr2:164553722(-) A-I      intronic
chr2:164553775(-) A-I      intronic
chr2:164553779(-) A-I      intronic
chr2:164486563(-) A-I      intronic
chr2:164486568(-) A-I      intronic
chr2:164552464(-) A-I      intronic
chr2:164486645(-) A-I      intronic
chr2:164491994(-) A-I      intronic
chr2:164491997(-) A-I      intronic
chr2:164492864(-) A-I      intronic
chr2:164492881(-) A-I      intronic
chr2:164552564(-) A-I      intronic
chr2:164553271(-) A-I      intronic
chr2:164486636(-) A-I      intronic
chr2:164553316(-) A-I      intronic
chr2:164553454(-) A-I      intronic
chr2:164553793(-) A-I      intronic
chr2:164553233(-) A-I      intronic
chr2:164486626(-) A-I      intronic
chr2:164486533(-) A-I      intronic
chr2:164553749(-) A-I      intronic
chr2:164552455(-) A-I      intronic
chr2:164491967(-) A-I      intronic
chr2:164518089(-) A-I      intronic
chr2:164553310(-) A-I      intronic
chr2:164492822(-) A-I      intronic
chr2:164525860(-) A-I      intronic
chr2:164552559(-) A-I      intronic
chr2:164489611(-) A-I      intronic
chr2:164479223(-) A-I      intronic
chr2:164479186(-) A-I      intronic
chr2:164518045(-) A-I      intronic
chr2:164553338(-) A-I      intronic
chr2:164545554(-) A-I      intronic
chr2:164525846(-) A-I      intronic
chr2:164553380(-) A-I      intronic
chr2:164552558(-) A-I      intronic
chr2:164553431(-) A-I      intronic
chr2:164491830(-) A-I      intronic
chr2:164478841(-) A-I      intronic
chr2:164479169(-) A-I      intronic
chr2:164534798(-) A-I      intronic
chr2:164552374(-) A-I      intronic
chr2:164553830(-) A-I      intronic
chr2:164517515(-) A-I      intronic
chr2:164553870(-) A-I      intronic
chr2:164553440(-) A-I      intronic
chr2:164486703(-) A-I      intronic
chr2:164552375(-) A-I      intronic
chr2:164553460(-) A-I      intronic
chr2:164553861(-) A-I      intronic
chr2:164553790(-) A-I      intronic
chr2:164525870(-) A-I      intronic
chr2:164492064(-) A-I      intronic
chr2:164553837(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FIGN
chr2:164459161-164459162(-) m6A 3'UTR//intron       27773535
chr2:164460166-164460167(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr2:164460217-164460218(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr2:164460269-164460270(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr2:164460326-164460327(-) m6A 3'UTR//intron       27773535//22608085
chr2:164460860-164460861(-) m6A 3'UTR//intron       27773535
chr2:164460911-164460912(-) m6A 3'UTR//intron       27773535//22608085
chr2:164460924-164460925(-) m6A 3'UTR//intron       27773535//22608085
chr2:164460950-164460951(-) m6A 3'UTR//intron       27773535//22608085
chr2:164461033-164461034(-) m6A 3'UTR//intron       27773535
chr2:164461049-164461050(-) m6A 3'UTR//intron       27773535
chr2:164461420-164461421(-) m6A 3'UTR//intron       27773535
chr2:164461654-164461655(-) m6A 3'UTR//intron       27773535
chr2:164461662-164461663(-) m6A 3'UTR//intron       27773535
chr2:164461736-164461737(-) m6A 3'UTR//intron       24284625//27773535
chr2:164461761-164461762(-) m6A 3'UTR//intron       24284625//27773535
chr2:164461784-164461785(-) m6A 3'UTR//intron       27773535
chr2:164461809-164461810(-) m6A 3'UTR//intron       27773535
chr2:164461832-164461833(-) m6A 3'UTR//intron       27773535
chr2:164462863-164462864(-) m6A 3'UTR//intron       27773535
chr2:164462883-164462884(-) m6A 3'UTR//intron       27773535
chr2:164464525-164464526(-) m6A 3'UTR//intron       27773535
chr2:164464576-164464577(-) m6A 3'UTR//intron       27773535
chr2:164464604-164464605(-) m6A 3'UTR//intron       27773535
chr2:164464756-164464757(-) m6A 3'UTR//intron       27773535
chr2:164464791-164464792(-) m6A 3'UTR//intron       27773535
chr2:164464803-164464804(-) m6A 3'UTR//intron       27773535
chr2:164464809-164464810(-) m6A 3'UTR//intron       27773535
chr2:164464831-164464832(-) m6A 3'UTR//intron       27773535
chr2:164464874-164464875(-) m6A 3'UTR//intron       27773535
chr2:164464918-164464919(-) m6A 3'UTR//intron       27773535
chr2:164465440-164465441(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:164465487-164465488(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:164465507-164465508(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:164465516-164465517(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:164465586-164465587(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:164465607-164465608(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:164465620-164465621(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:164465630-164465631(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:164465763-164465764(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:164465769-164465770(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:164465816-164465817(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:164466009-164466010(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr2:164466086-164466087(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:164466158-164466159(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466206-164466207(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466271-164466272(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466445-164466446(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr2:164466476-164466477(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466500-164466501(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466522-164466523(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466547-164466548(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr2:164466679-164466680(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466744-164466745(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466753-164466754(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466763-164466764(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466799-164466800(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466890-164466891(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164466901-164466902(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164467003-164467004(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164467183-164467184(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:164467230-164467231(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr2:164467268-164467269(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr2:164467352-164467353(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:164467412-164467413(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:164467575-164467576(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:164467626-164467627(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:164467861-164467862(-) m6A CDS//intron       24284625//27773535
chr2:164467976-164467977(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22575960//22608085
chr2:164468020-164468021(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164468050-164468051(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:164468063-164468064(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr2:164468090-164468091(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548h-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
FIGN
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548h-5p
Interactor2: FIGN

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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