Detail Information

Basic Information:


  VIRBase ID:  

HHID00108587

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:           GPR85:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548h-5p GPR85
miRBase
Accession/Entrez ID		 MIMAT0005928 54329
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - SREB//SREB2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548h-5p
rs1423828980 chr14:64095086    C/T
rs144194694 chr14:64095094    G/A
rs377270470 chr14:64095095    C/A
rs377270470 chr14:64095095    C/T
rs573600271 chr14:64095093    C/T
rs1000965353 chr16:11306498    A/G
rs1307745356 chr16:11306500    C/T
rs1353674605 chr16:11306491    G/A
rs1353674605 chr16:11306491    G/T
rs149601213 chr16:11306499    C/T
rs563549339 chr16:11306501    G/A
rs956694910 chr16:11306502    C/T
rs988390663 chr16:11306503    G/A
rs1247348117 chr17:13543606    C/T
rs1307196788 chr17:13543599    CAA/C
rs1341303954 chr17:13543598    A/AAAGTAATAG
rs1348342088 chr17:13543609    G/A
rs9913045 chr17:13543607    G/A
rs1285835311 chr8:27048929    A/G
rs1295636494 chr8:27048928    CA/C
rs1306358433 chr8:27048936    G/A
rs1352583339 chr8:27048937    C/T
rs1354349512 chr8:27048928    C/T
rs1391960313 chr8:27048933    A/C
rs561726723 chr8:27048935    C/T
rs748156409 chr8:27048926    G/A
rs748156409 chr8:27048926    G/T
rs1042357839 chr6:131792184    G/A
rs1225605725 chr6:131792194    T/C
rs1257986495 chr6:131792187    G/A
rs1345907099 chr6:131792186    G/T
rs1466227719 chr6:131792183    C/A
rs1466227719 chr6:131792183    C/T
rs906403807 chr6:131792185    C/A
rs1384709035 chr6:131792178    G/A

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GPR85
chr7:112723192-112723193(-) m6A 3'UTR       24981863
chr7:112723208-112723209(-) m6A 3'UTR       24981863
chr7:112723237-112723238(-) m6A 3'UTR       24981863
chr7:112723245-112723246(-) m6A 3'UTR       24981863
chr7:112723266-112723267(-) m6A 3'UTR       24981863
chr7:112723312-112723313(-) m6A 3'UTR       24981863
chr7:112723326-112723327(-) m6A 3'UTR       24981863
chr7:112723336-112723337(-) m6A 3'UTR       24981863
chr7:112723406-112723407(-) m6A 3'UTR       24981863
chr7:112723439-112723440(-) m6A 3'UTR       24981863
chr7:112723444-112723445(-) m6A 3'UTR       24981863
chr7:112723985-112723986(-) m6A CDS       24981863
chr7:112724091-112724092(-) m6A CDS       -
chr7:112724096-112724097(-) m6A CDS       -
chr7:112724337-112724338(-) m6A CDS       24981863//27773535
chr7:112724505-112724506(-) m6A CDS       24981863//22608085
chr7:112724514-112724515(-) m6A CDS       24981863//22608085
chr7:112724628-112724629(-) m6A CDS       24981863//22608085
chr7:112724707-112724708(-) m6A CDS       24981863//22608085
chr7:112724768-112724769(-) m6A CDS       24981863//22608085
chr7:112724812-112724813(-) m6A 5'UTR//exon       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548h-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
GPR85
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548h-5p
Interactor2: GPR85

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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