Basic Information:

  VIRBase ID:  

HHID00108576

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:  MIMAT0005928          FLRT3:  NM_013281     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548h-5p	FLRT3
miRBase Accession/Entrez ID	MIMAT0005928	23767
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	HH21

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548h-5p	rs1423828980 chr14:64095086    C/T rs144194694 chr14:64095094    G/A rs377270470 chr14:64095095    C/A rs377270470 chr14:64095095    C/T rs573600271 chr14:64095093    C/T rs1000965353 chr16:11306498    A/G rs1307745356 chr16:11306500    C/T rs1353674605 chr16:11306491    G/A rs1353674605 chr16:11306491    G/T rs149601213 chr16:11306499    C/T rs563549339 chr16:11306501    G/A rs956694910 chr16:11306502    C/T rs988390663 chr16:11306503    G/A rs1247348117 chr17:13543606    C/T rs1307196788 chr17:13543599    CAA/C rs1341303954 chr17:13543598    A/AAAGTAATAG rs1348342088 chr17:13543609    G/A rs9913045 chr17:13543607    G/A rs1285835311 chr8:27048929    A/G rs1295636494 chr8:27048928    CA/C rs1306358433 chr8:27048936    G/A rs1352583339 chr8:27048937    C/T rs1354349512 chr8:27048928    C/T rs1391960313 chr8:27048933    A/C rs561726723 chr8:27048935    C/T rs748156409 chr8:27048926    G/A rs748156409 chr8:27048926    G/T rs1042357839 chr6:131792184    G/A rs1225605725 chr6:131792194    T/C rs1257986495 chr6:131792187    G/A rs1345907099 chr6:131792186    G/T rs1466227719 chr6:131792183    C/A rs1466227719 chr6:131792183    C/T rs906403807 chr6:131792185    C/A rs1384709035 chr6:131792178    G/A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FLRT3	chr20:14303689-14303690(-) m6A 3'UTR       27773535 chr20:14303699-14303700(-) m6A 3'UTR       27773535 chr20:14303729-14303730(-) m6A 3'UTR       27773535 chr20:14303754-14303755(-) m6A 3'UTR       27773535 chr20:14303767-14303768(-) m6A 3'UTR       27773535 chr20:14305919-14305920(-) m6A 3'UTR       24981863//27773535 chr20:14305989-14305990(-) m6A 3'UTR       24981863//26404942//27773535 chr20:14306052-14306053(-) m6A 3'UTR       24981863//26404942//27773535 chr20:14306103-14306104(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085 chr20:14306118-14306119(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085 chr20:14306136-14306137(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085 chr20:14306159-14306160(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085 chr20:14306181-14306182(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085 chr20:14306192-14306193(-) m6A 3'UTR       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:14306224-14306225(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:14306239-14306240(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:14306278-14306279(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14306346-14306347(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306378-14306379(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14306404-14306405(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14306467-14306468(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14306581-14306582(-) m6A CDS       24209618//24981863//27773535//22608085 chr20:14306592-14306593(-) m6A CDS       24209618//24981863//27773535//22608085 chr20:14306651-14306652(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306657-14306658(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306675-14306676(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306702-14306703(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306789-14306790(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306826-14306827(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306841-14306842(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306868-14306869(-) m6A CDS       24209618//24981863//26404942//27773535//22608085 chr20:14306924-14306925(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14306948-14306949(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14306974-14306975(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14306991-14306992(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14307015-14307016(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14307082-14307083(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14307099-14307100(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085 chr20:14307268-14307269(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14307409-14307410(-) m6A CDS       24981863//26404942//22608085 chr20:14307424-14307425(-) m6A CDS       24981863//26404942//22608085 chr20:14307517-14307518(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14307526-14307527(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14307615-14307616(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14307626-14307627(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14307697-14307698(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14307800-14307801(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14307910-14307911(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14307952-14307953(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14308115-14308116(-) m6A CDS       24981863//26404942//27773535//22608085 chr20:14308169-14308170(-) m6A 5'UTR       24981863//27773535 chr20:14309688-14309689(-) m6A exon//intron       24981863//27773535 chr20:14309832-14309833(-) m6A 5'UTR//exon//intron       24981863 chr20:14318158-14318159(-) m6A 5'UTR//exon       24981863//27773535 chr20:14318195-14318196(-) m6A 5'UTR//exon       24981863//27773535 chr20:14318248-14318249(-) m6A 5'UTR//exon       25456834//24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548h-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     - Mitochondrion Cell line (HEK-293|HeLa)     22984580
	FLRT3	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548h-5p
Interactor2: FLRT3

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.