Basic Information:

  VIRBase ID:  

HHID00108568

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:  MIMAT0005928          B3GALT5:  NM_001278650     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548h-5p	B3GALT5
miRBase Accession/Entrez ID	MIMAT0005928	10317
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	B3GalT-V//B3GalTx//B3T5//beta-1,3-GalTase 5//beta-3-Gx-T5//beta3Gal-T5//GLCT5

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548h-5p	rs1423828980 chr14:64095086    C/T rs144194694 chr14:64095094    G/A rs377270470 chr14:64095095    C/A rs377270470 chr14:64095095    C/T rs573600271 chr14:64095093    C/T rs1000965353 chr16:11306498    A/G rs1307745356 chr16:11306500    C/T rs1353674605 chr16:11306491    G/A rs1353674605 chr16:11306491    G/T rs149601213 chr16:11306499    C/T rs563549339 chr16:11306501    G/A rs956694910 chr16:11306502    C/T rs988390663 chr16:11306503    G/A rs1247348117 chr17:13543606    C/T rs1307196788 chr17:13543599    CAA/C rs1341303954 chr17:13543598    A/AAAGTAATAG rs1348342088 chr17:13543609    G/A rs9913045 chr17:13543607    G/A rs1285835311 chr8:27048929    A/G rs1295636494 chr8:27048928    CA/C rs1306358433 chr8:27048936    G/A rs1352583339 chr8:27048937    C/T rs1354349512 chr8:27048928    C/T rs1391960313 chr8:27048933    A/C rs561726723 chr8:27048935    C/T rs748156409 chr8:27048926    G/A rs748156409 chr8:27048926    G/T rs1042357839 chr6:131792184    G/A rs1225605725 chr6:131792194    T/C rs1257986495 chr6:131792187    G/A rs1345907099 chr6:131792186    G/T rs1466227719 chr6:131792183    C/A rs1466227719 chr6:131792183    C/T rs906403807 chr6:131792185    C/A rs1384709035 chr6:131792178    G/A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	B3GALT5	chr21:40977134-40977135(+) m6A 5'UTR       25456834//24981863 chr21:41018344-41018345(+) m6A 5'UTR//intron       25456834//24981863 chr21:41032584-41032585(+) m6A CDS       25456834//24981863 chr21:41032613-41032614(+) m6A CDS       25456834//24981863 chr21:41032637-41032638(+) m6A CDS       25456834//24981863 chr21:41032648-41032649(+) m6A CDS       25456834//24981863 chr21:41032689-41032690(+) m6A CDS       25456834//24981863 chr21:41032762-41032763(+) m6A CDS       25456834//24981863 chr21:41032780-41032781(+) m6A CDS       25456834//24981863 chr21:41032814-41032815(+) m6A CDS       25456834//24981863 chr21:41032838-41032839(+) m6A CDS       25456834//24981863 chr21:41032888-41032889(+) m6A CDS       25456834//24981863 chr21:41032948-41032949(+) m6A CDS       25456834//24981863 chr21:41032958-41032959(+) m6A CDS       25456834//24981863 chr21:41032989-41032990(+) m6A CDS       25456834//24981863 chr21:41033006-41033007(+) m6A CDS       25456834//24981863 chr21:41033011-41033012(+) m6A CDS       25456834//24981863 chr21:41033040-41033041(+) m6A CDS       25456834//24981863 chr21:41033246-41033247(+) m6A CDS       25456834 chr21:41033356-41033357(+) m6A CDS       25456834//24981863 chr21:41033366-41033367(+) m6A CDS       25456834//24981863 chr21:41033442-41033443(+) m6A 3'UTR       25456834 chr21:41033500-41033501(+) m6A 3'UTR       25456834 chr21:41033721-41033722(+) m6A 3'UTR       25456834//24981863 chr21:41033747-41033748(+) m6A 3'UTR       25456834//24981863 chr21:41033835-41033836(+) m6A 3'UTR       25456834//24981863 chr21:41033868-41033869(+) m6A 3'UTR       25456834//24981863 chr21:41034110-41034111(+) m6A 3'UTR       24981863 chr21:41034124-41034125(+) m6A 3'UTR       24981863 chr21:41034160-41034161(+) m6A 3'UTR       24981863 chr21:41034187-41034188(+) m6A 3'UTR       25456834//24981863 chr21:41034221-41034222(+) m6A 3'UTR       25456834//24981863 chr21:41034293-41034294(+) m6A 3'UTR       25456834//24981863 chr21:41034335-41034336(+) m6A 3'UTR       25456834//24981863 chr21:41034343-41034344(+) m6A 3'UTR       25456834//24981863 chr21:41034351-41034352(+) m6A 3'UTR       25456834//24981863 chr21:41034427-41034428(+) m6A 3'UTR       25456834//24981863 chr21:41034540-41034541(+) m6A 3'UTR       25456834 chr21:41034548-41034549(+) m6A 3'UTR       25456834 chr21:41034746-41034747(+) m6A 3'UTR       24981863 chr21:41034804-41034805(+) m6A 3'UTR       24981863 chr21:41034809-41034810(+) m6A 3'UTR       24981863 chr21:41034821-41034822(+) m6A 3'UTR       24981863 chr21:41035290-41035291(+) m6A 3'UTR       25456834 chr21:41035300-41035301(+) m6A 3'UTR       25456834 chr21:41035355-41035356(+) m6A 3'UTR       25456834 chr21:41043769-41043770(+) m6A 3'UTR       25456834 chr21:41043806-41043807(+) m6A 3'UTR       25456834 chr21:41043887-41043888(+) m6A 3'UTR       25456834//24981863 chr21:41043895-41043896(+) m6A 3'UTR       25456834//24981863 chr21:41043946-41043947(+) m6A 3'UTR       24981863 chr21:41043980-41043981(+) m6A 3'UTR       24981863 chr21:41044088-41044089(+) m6A 3'UTR       25456834//24981863 chr21:41044104-41044105(+) m6A 3'UTR       25456834//24981863 chr21:41044184-41044185(+) m6A 3'UTR       25456834//24981863 chr21:41044264-41044265(+) m6A 3'UTR       24981863 chr21:41044315-41044316(+) m6A 3'UTR       24981863 chr21:41044347-41044348(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548h-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     - Mitochondrion Cell line (HEK-293|HeLa)     22984580
	B3GALT5	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548h-5p
Interactor2: B3GALT5

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.