Basic Information:

  VIRBase ID:  

HHID00108547

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:  MIMAT0005928          NFKB1:  NM_001319226     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548h-5p	NFKB1
miRBase Accession/Entrez ID	MIMAT0005928	4790
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	CVID12//EBP-1//KBF1//NF-kappa-B1//NF-kappaB//NF-kappabeta//NF-kB//NF-kB1//NFkappaB//NFKB-p105//NFKB-p50

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548h-5p	rs1423828980 chr14:64095086    C/T rs144194694 chr14:64095094    G/A rs377270470 chr14:64095095    C/A rs377270470 chr14:64095095    C/T rs573600271 chr14:64095093    C/T rs1000965353 chr16:11306498    A/G rs1307745356 chr16:11306500    C/T rs1353674605 chr16:11306491    G/A rs1353674605 chr16:11306491    G/T rs149601213 chr16:11306499    C/T rs563549339 chr16:11306501    G/A rs956694910 chr16:11306502    C/T rs988390663 chr16:11306503    G/A rs1247348117 chr17:13543606    C/T rs1307196788 chr17:13543599    CAA/C rs1341303954 chr17:13543598    A/AAAGTAATAG rs1348342088 chr17:13543609    G/A rs9913045 chr17:13543607    G/A rs1285835311 chr8:27048929    A/G rs1295636494 chr8:27048928    CA/C rs1306358433 chr8:27048936    G/A rs1352583339 chr8:27048937    C/T rs1354349512 chr8:27048928    C/T rs1391960313 chr8:27048933    A/C rs561726723 chr8:27048935    C/T rs748156409 chr8:27048926    G/A rs748156409 chr8:27048926    G/T rs1042357839 chr6:131792184    G/A rs1225605725 chr6:131792194    T/C rs1257986495 chr6:131792187    G/A rs1345907099 chr6:131792186    G/T rs1466227719 chr6:131792183    C/A rs1466227719 chr6:131792183    C/T rs906403807 chr6:131792185    C/A rs1384709035 chr6:131792178    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NFKB1	chr4:103523438(+) A-I      intronic chr4:103523449(+) A-I      intronic chr4:103523459(+) A-I      intronic chr4:103493795(+) A-I      intronic chr4:103492977(+) A-I      intronic chr4:103492953(+) A-I      intronic chr4:103491504(+) A-I      intronic chr4:103491499(+) A-I      intronic chr4:103491467(+) A-I      intronic chr4:103465253(+) A-I      intronic chr4:103524504(+) A-I      intronic chr4:103524508(+) A-I      intronic chr4:103523433(+) A-I      intronic chr4:103524404(+) A-I      intronic chr4:103524369(+) A-I      intronic chr4:103524359(+) A-I      intronic chr4:103524347(+) A-I      intronic chr4:103524330(+) A-I      intronic chr4:103523603(+) A-I      intronic chr4:103481082(+) A-I      intronic chr4:103479949(+) A-I      intronic chr4:103479851(+) A-I      intronic chr4:103433632(+) A-I      intronic chr4:103433605(+) A-I      intronic chr4:103432839(+) A-I      intronic chr4:103432582(+) A-I      intronic chr4:103480975(+) A-I      intronic chr4:103524467(+) A-I      intronic chr4:103433606(+) A-I      intronic chr4:103479909(+) A-I      intronic chr4:103523426(+) A-I      intronic chr4:103432753(+) A-I      intronic chr4:103432590(+) A-I      intronic chr4:103432816(+) A-I      intronic chr4:103523576(+) A-I      intronic chr4:103432576(+) A-I      intronic chr4:103479947(+) A-I      intronic chr4:103432560(+) A-I      intronic chr4:103524281(+) A-I      intronic chr4:103432739(+) A-I      intronic chr4:103479811(+) A-I      intronic chr4:103433631(+) A-I      intronic chr4:103433610(+) A-I      intronic chr4:103479934(+) A-I      intronic chr4:103479920(+) A-I      intronic chr4:103480821(+) A-I      intronic chr4:103433724(+) A-I      intronic chr4:103480827(+) A-I      intronic chr4:103481040(+) A-I      intronic chr4:103435067(+) A-I      intronic chr4:103480989(+) A-I      intronic chr4:103523432(+) A-I      intronic chr4:103481050(+) A-I      intronic chr4:103479831(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NFKB1	chr4:103480975(+) A-I intron -    22327324 chr4:103491632(+) A-G intron -    22484847 chr4:103491738(+) A-G intron -    22484847 chr4:103493713(+) A-G intron -    22484847 chr4:103493734(+) A-G intron -    22484847 chr4:103432560(+) A-G intron -    22484847 chr4:103432576(+) A-G intron -    22484847 chr4:103432590(+) A-G intron -    22484847 chr4:103432646(+) A-G intron -    22484847 chr4:103432650(+) A-G intron -    22484847 chr4:103432753(+) A-G intron -    22484847 chr4:103432816(+) A-G intron -    22484847 chr4:103433557(+) A-G intron -    22484847 chr4:103433606(+) A-G intron -    22484847 chr4:103433610(+) A-G intron -    22484847 chr4:103433618(+) A-G intron -    22484847 chr4:103433623(+) A-G intron -    22484847 chr4:103433631(+) A-G intron -    22484847 chr4:103435067(+) A-G intron -    22484847 chr4:103479811(+) A-G intron -    22484847 chr4:103479831(+) A-G intron -    22484847 chr4:103479877(+) A-G intron -    22484847 chr4:103479920(+) A-G intron -    22484847 chr4:103479934(+) A-G intron -    22484847 chr4:103479937(+) A-G intron -    22484847 chr4:103480975(+) A-G intron -    22484847 chr4:103480989(+) A-G intron -    22484847 chr4:103523426(+) A-G intron -    22484847 chr4:103523430(+) A-G intron -    22484847 chr4:103523576(+) A-G intron -    22484847 chr4:103523638(+) A-G intron -    22484847 chr4:103524281(+) A-G intron -    22484847 chr4:103524467(+) A-G intron -    22484847 chr4:103530591(+) A-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NFKB1	chr4:103422502-103422503(+) m6A 5'UTR       24981863 chr4:103517354-103517355(+) m6A CDS//exon       26404942 chr4:103517363-103517364(+) m6A CDS//exon       26404942 chr4:103517386-103517387(+) m6A CDS//exon       26404942 chr4:103517461-103517462(+) m6A CDS//exon       26404942 chr4:103537602-103537603(+) m6A CDS       24284625 chr4:103537634-103537635(+) m6A CDS       24284625//24981863//26404942 chr4:103537648-103537649(+) m6A CDS       24284625//24981863//26404942 chr4:103537729-103537730(+) m6A CDS       24284625//24981863//26404942//22608085 chr4:103537779-103537780(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr4:103537815-103537816(+) m6A 3'UTR       24284625//24981863//26404942//22608085 chr4:103537886-103537887(+) m6A 3'UTR       24284625//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548h-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     - Mitochondrion Cell line (HEK-293|HeLa)     22984580
	NFKB1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548h-5p
Interactor2: NFKB1

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.