Basic Information:

  VIRBase ID:  

HHID00108541

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548h-5p:  MIMAT0005928          CNTN1:  NM_001256064     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548h-5p	CNTN1
miRBase Accession/Entrez ID	MIMAT0005928	1272
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	F3//GP135//MYPCN

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548h-5p	rs1423828980 chr14:64095086    C/T rs144194694 chr14:64095094    G/A rs377270470 chr14:64095095    C/A rs377270470 chr14:64095095    C/T rs573600271 chr14:64095093    C/T rs1000965353 chr16:11306498    A/G rs1307745356 chr16:11306500    C/T rs1353674605 chr16:11306491    G/A rs1353674605 chr16:11306491    G/T rs149601213 chr16:11306499    C/T rs563549339 chr16:11306501    G/A rs956694910 chr16:11306502    C/T rs988390663 chr16:11306503    G/A rs1247348117 chr17:13543606    C/T rs1307196788 chr17:13543599    CAA/C rs1341303954 chr17:13543598    A/AAAGTAATAG rs1348342088 chr17:13543609    G/A rs9913045 chr17:13543607    G/A rs1285835311 chr8:27048929    A/G rs1295636494 chr8:27048928    CA/C rs1306358433 chr8:27048936    G/A rs1352583339 chr8:27048937    C/T rs1354349512 chr8:27048928    C/T rs1391960313 chr8:27048933    A/C rs561726723 chr8:27048935    C/T rs748156409 chr8:27048926    G/A rs748156409 chr8:27048926    G/T rs1042357839 chr6:131792184    G/A rs1225605725 chr6:131792194    T/C rs1257986495 chr6:131792187    G/A rs1345907099 chr6:131792186    G/T rs1466227719 chr6:131792183    C/A rs1466227719 chr6:131792183    C/T rs906403807 chr6:131792185    C/A rs1384709035 chr6:131792178    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CNTN1	chr12:41360910(+) A-I      intronic chr12:41360894(+) A-I      intronic chr12:41443760(+) A-I      intronic chr12:41360924(+) A-I      intronic chr12:41360921(+) A-I      intronic chr12:41360890(+) A-I      intronic chr12:41360889(+) A-I      intronic chr12:41360881(+) A-I      intronic chr12:41153394(+) A-I      intronic chr12:41153393(+) A-I      intronic chr12:41153388(+) A-I      intronic chr12:41153361(+) A-I      intronic chr12:41114545(+) A-I      intronic chr12:41114551(+) A-I      intronic chr12:41443827(+) A-I      intronic chr12:41153407(+) A-I      intronic chr12:41156896(+) A-I      intronic chr12:41156907(+) A-I      intronic chr12:41156933(+) A-I      intronic chr12:41156935(+) A-I      intronic chr12:41443782(+) A-I      intronic chr12:41443766(+) A-I      intronic chr12:41443765(+) A-I      intronic chr12:41443763(+) A-I      intronic chr12:41360918(+) A-I      intronic chr12:41360914(+) A-I      intronic chr12:41443795(+) A-I      intronic chr12:41368194(+) A-I      intronic chr12:41443788(+) A-I      intronic chr12:41148828(+) A-I      intronic chr12:41368203(+) A-I      intronic chr12:41255931(+) A-I      intronic chr12:41161286(+) A-I      intronic chr12:41368202(+) A-I      intronic chr12:41240942(+) A-I      intronic chr12:41240915(+) A-I      intronic chr12:41161309(+) A-I      intronic chr12:41240809(+) A-I      intronic chr12:41160169(+) A-I      intronic chr12:41240149(+) A-I      intronic chr12:41148807(+) A-I      intronic chr12:41153397(+) A-I      intronic chr12:41159951(+) A-I      intronic chr12:41149416(+) A-I      intronic chr12:41113766(+) A-I      intronic chr12:41149281(+) A-I      intronic chr12:41240155(+) A-I      intronic chr12:41118949(+) A-I      intronic chr12:41114476(+) A-I      intronic chr12:41240799(+) A-I      intronic chr12:41114611(+) A-I      intronic chr12:41152920(+) A-I      intronic chr12:41159984(+) A-I      intronic chr12:41096340(+) A-I      intronic chr12:41148846(+) A-I      intronic chr12:41114543(+) A-I      intronic chr12:41148841(+) A-I      intronic chr12:41458868(+) A-I      intronic chr12:41113676(+) A-I      intronic chr12:41114498(+) A-I      intronic chr12:41149432(+) A-I      intronic chr12:41332810(+) A-I      intronic chr12:41153401(+) A-I      intronic chr12:41459131(+) A-I      intronic chr12:41094207(+) A-I      intronic chr12:41371827(+) A-I      intronic chr12:41161384(+) A-I      intronic chr12:41371814(+) A-I      intronic chr12:41114620(+) A-I      intronic chr12:41148811(+) A-I      intronic chr12:41458860(+) A-I      intronic chr12:41148882(+) A-I      intronic chr12:41300651(+) A-I      intronic chr12:41271180(+) A-I      intronic chr12:41316587(+) A-I      intronic chr12:41120122(+) A-I      intronic chr12:41207658(+) A-I      intronic chr12:41457740(+) A-I      intronic chr12:41159973(+) A-I      intronic chr12:41238202(+) A-I      intronic chr12:41114553(+) A-I      intronic chr12:41457741(+) A-I      intronic chr12:41158270(+) A-I      intronic chr12:41149451(+) A-I      intronic chr12:41148872(+) A-I      intronic chr12:41240844(+) A-I      intronic chr12:41300741(+) A-I      intronic chr12:41092245(+) A-I      intronic chr12:41099756(+) A-I      intronic chr12:41106659(+) A-I      intronic chr12:41119056(+) A-I      intronic chr12:41457921(+) A-I      intronic chr12:41257365(+) A-I      intronic chr12:41457710(+) A-I      intronic chr12:41120385(+) A-I      intronic chr12:41152927(+) A-I      intronic chr12:41149332(+) A-I      intronic chr12:41275929(+) A-I      intronic chr12:41152806(+) A-I      intronic chr12:41114584(+) A-I      intronic chr12:41153299(+) A-I      intronic chr12:41094205(+) A-I      intronic chr12:41257391(+) A-I      intronic chr12:41113779(+) A-I      intronic chr12:41463261(+) A-I      intronic chr12:41293514(+) A-I      intronic chr12:41159995(+) A-I      intronic chr12:41371843(+) A-I      intronic chr12:41149323(+) A-I      intronic chr12:41300754(+) A-I      intronic chr12:41371805(+) A-I      intronic chr12:41426090(+) A-I      intronic chr12:41271198(+) A-I      intronic chr12:41114493(+) A-I      intronic chr12:41092118(+) A-I      intronic chr12:41443736(+) A-I      intronic chr12:41114610(+) A-I      intronic chr12:41300581(+) A-I      intronic chr12:41148887(+) A-I      intronic chr12:41119043(+) A-I      intronic chr12:41153454(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CNTN1	chr12:41086338-41086339(+) m6A 5'UTR       24981863 chr12:41086390-41086391(+) m6A 5'UTR       24981863 chr12:41136158-41136159(+) m6A 5'UTR//intron       24981863 chr12:41312452-41312453(+) m6A CDS       26404942 chr12:41312465-41312466(+) m6A CDS       26404942 chr12:41316119-41316120(+) m6A CDS       26404942 chr12:41316144-41316145(+) m6A CDS       26404942 chr12:41327635-41327636(+) m6A CDS       26404942 chr12:41327654-41327655(+) m6A CDS       26404942 chr12:41330601-41330602(+) m6A CDS       26404942 chr12:41330624-41330625(+) m6A CDS       26404942 chr12:41333218-41333219(+) m6A CDS       26404942 chr12:41333236-41333237(+) m6A CDS       26404942 chr12:41333261-41333262(+) m6A CDS       26404942 chr12:41374826-41374827(+) m6A CDS       24981863 chr12:41374832-41374833(+) m6A CDS       24981863 chr12:41374865-41374866(+) m6A CDS       24981863 chr12:41386966-41386967(+) m6A CDS       24981863//26404942 chr12:41387058-41387059(+) m6A CDS       24981863//26404942 chr12:41408074-41408075(+) m6A CDS//exon       24981863 chr12:41410615-41410616(+) m6A CDS//exon       24981863//26404942 chr12:41410677-41410678(+) m6A CDS//exon       24981863//26404942 chr12:41463877-41463878(+) m6A 3'UTR       24981863//22608085 chr12:41463959-41463960(+) m6A 3'UTR       24981863//22608085 chr12:41464006-41464007(+) m6A 3'UTR       24981863//22608085 chr12:41464028-41464029(+) m6A 3'UTR       24981863//22608085 chr12:41464079-41464080(+) m6A 3'UTR       24981863//22608085 chr12:41464126-41464127(+) m6A 3'UTR       24981863 chr12:41464946-41464947(+) m6A 3'UTR       26404942 chr12:41465003-41465004(+) m6A 3'UTR       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548h-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     - Mitochondrion Cell line (HEK-293|HeLa)     22984580
	CNTN1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548h-5p
Interactor2: CNTN1

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.