Basic Information:

  VIRBase ID:  

HHID00108437

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548d-5p:  MIMAT0004812          CCSER1:  NM_001145065     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548d-5p	CCSER1
miRBase Accession/Entrez ID	MIMAT0004812	401145
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAM190A

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548d-5p	rs1240978917 chr8:123348085    G/A rs1370161434 chr8:123348096    C/A rs1423052174 chr8:123348086    G/A rs1039169216 chr17:67471540    G/A rs1039169216 chr17:67471540    G/T rs543252291 chr17:67471553    A/G rs1196924094 chr8:123348101    A/G rs756308753 chr8:123348103    T/C rs768094101 chr17:67471554    T/G rs899430888 chr17:67471556    A/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCSER1	chr4:91435822(+) A-I      intronic chr4:92157634(+) A-I      intronic chr4:92160074(+) A-I      intronic chr4:91853853(+) A-I      intronic chr4:91747048(+) A-I      intronic chr4:91435776(+) A-I      intronic chr4:91846092(+) A-I      intronic chr4:91475440(+) A-I      intronic chr4:91475443(+) A-I      intronic chr4:91475456(+) A-I      intronic chr4:91475460(+) A-I      intronic chr4:91475464(+) A-I      intronic chr4:91853911(+) A-I      intronic chr4:91334882(+) A-I      intronic chr4:91854419(+) A-I      intronic chr4:91854456(+) A-I      intronic chr4:91475435(+) A-I      intronic chr4:91436113(+) A-I      intronic chr4:91436192(+) A-I      intronic chr4:91436209(+) A-I      intronic chr4:92168938(+) A-I      intronic chr4:92160253(+) A-I      intronic chr4:92231970(+) A-I      intronic chr4:92231969(+) A-I      intronic chr4:92231967(+) A-I      intronic chr4:92392941(+) A-I      intronic chr4:92344525(+) A-I      intronic chr4:92344502(+) A-I      intronic chr4:91853829(+) A-I      intronic chr4:92288383(+) A-I      intronic chr4:92449207(+) A-I      intronic chr4:91864814(+) A-I      intronic chr4:91864818(+) A-I      intronic chr4:91864843(+) A-I      intronic chr4:91909427(+) A-I      intronic chr4:91236101(+) A-I      intronic chr4:91909432(+) A-I      intronic chr4:91909443(+) A-I      intronic chr4:92296040(+) A-I      intronic chr4:92296059(+) A-I      intronic chr4:92470866(+) A-I      intronic chr4:92470892(+) A-I      intronic chr4:91084600(+) A-I      intronic chr4:91084627(+) A-I      intronic chr4:91084568(+) A-I      intronic chr4:91084635(+) A-I      intronic chr4:92296072(+) A-I      intronic chr4:91084690(+) A-I      intronic chr4:91084676(+) A-I      intronic chr4:92288370(+) A-I      intronic chr4:91084696(+) A-I      intronic chr4:91565641(+) A-I      intronic chr4:91565646(+) A-I      intronic chr4:91565659(+) A-I      intronic chr4:91565672(+) A-I      intronic chr4:91565680(+) A-I      intronic chr4:91565681(+) A-I      intronic chr4:92231962(+) A-I      intronic chr4:92160252(+) A-I      intronic chr4:91083000(+) A-I      intronic chr4:91082999(+) A-I      intronic chr4:91082995(+) A-I      intronic chr4:91082994(+) A-I      intronic chr4:91082993(+) A-I      intronic chr4:91082976(+) A-I      intronic chr4:91082963(+) A-I      intronic chr4:91082937(+) A-I      intronic chr4:91084567(+) A-I      intronic chr4:91084564(+) A-I      intronic chr4:91854545(+) A-I      intronic chr4:91084573(+) A-I      intronic chr4:91854560(+) A-I      intronic chr4:92115355(+) A-I      intronic chr4:91060920(+) A-I      intronic chr4:91060990(+) A-I      intronic chr4:91138537(+) A-I      intronic chr4:91138539(+) A-I      intronic chr4:91139162(+) A-I      intronic chr4:91139180(+) A-I      intronic chr4:91139214(+) A-I      intronic chr4:91163338(+) A-I      intronic chr4:92232014(+) A-I      intronic chr4:91163343(+) A-I      intronic chr4:91163403(+) A-I      intronic chr4:91163410(+) A-I      intronic chr4:91163418(+) A-I      intronic chr4:91163445(+) A-I      intronic chr4:91309987(+) A-I      intronic chr4:91909431(+) A-I      intronic chr4:91084592(+) A-I      intronic chr4:91334979(+) A-I      intronic chr4:91343665(+) A-I      intronic chr4:91475404(+) A-I      intronic chr4:91435832(+) A-I      intronic chr4:91344765(+) A-I      intronic chr4:91435786(+) A-I      intronic chr4:91747045(+) A-I      intronic chr4:91731680(+) A-I      intronic chr4:91484402(+) A-I      intronic chr4:91484399(+) A-I      intronic chr4:91483084(+) A-I      intronic chr4:91483070(+) A-I      intronic chr4:91457459(+) A-I      intronic chr4:91344811(+) A-I      intronic chr4:92231971(+) A-I      intronic chr4:91427795(+) A-I      intronic chr4:92231979(+) A-I      intronic chr4:92231980(+) A-I      intronic chr4:91435787(+) A-I      intronic chr4:92262834(+) A-I      intronic chr4:91182000(+) A-I      intronic chr4:92039703(+) A-I      intronic chr4:91483204(+) A-I      intronic chr4:92288235(+) A-I      intronic chr4:91436183(+) A-I      intronic chr4:91909419(+) A-I      intronic chr4:91864788(+) A-I      intronic chr4:91698452(+) A-I      intronic chr4:92267207(+) A-I      intronic chr4:91064905(+) A-I      intronic chr4:91853814(+) A-I      intronic chr4:92157383(+) A-I      intronic chr4:91856014(+) A-I      intronic chr4:91139152(+) A-I      intronic chr4:91853868(+) A-I      intronic chr4:92088418(+) A-I      intronic chr4:92094757(+) A-I      intronic chr4:91235782(+) A-I      intronic chr4:91310009(+) A-I      intronic chr4:91480794(+) A-I      intronic chr4:91855828(+) A-I      intronic chr4:91650906(+) A-I      intronic chr4:92022731(+) A-I      intronic chr4:91480700(+) A-I      intronic chr4:92160114(+) A-I      intronic chr4:91854478(+) A-I      intronic chr4:91061864(+) A-I      intronic chr4:92168765(+) A-I      intronic chr4:91101482(+) A-I      intronic chr4:91059382(+) A-I      intronic chr4:91960429(+) A-I      intronic chr4:91059428(+) A-I      intronic chr4:91766329(+) A-I      intronic chr4:91853864(+) A-I      intronic chr4:91223833(+) A-I      intronic chr4:92453129(+) A-I      intronic chr4:91344808(+) A-I      intronic chr4:92168198(+) A-I      intronic chr4:91483221(+) A-I      intronic chr4:91450520(+) A-I      intronic chr4:91853703(+) A-I      intronic chr4:92469168(+) A-I      intronic chr4:91853783(+) A-I      intronic chr4:91853873(+) A-I      intronic chr4:92160182(+) A-I      intronic chr4:91483178(+) A-I      intronic chr4:92266367(+) A-I      intronic chr4:91235818(+) A-I      intronic chr4:92352892(+) A-I      intronic chr4:92365701(+) A-I      intronic chr4:92344506(+) A-I      intronic chr4:92291712(+) A-I      intronic chr4:91223860(+) A-I      intronic chr4:91281198(+) A-I      intronic chr4:91853818(+) A-I      intronic chr4:91223941(+) A-I      intronic chr4:91846078(+) A-I      intronic chr4:91139226(+) A-I      intronic chr4:92117137(+) A-I      intronic chr4:92288189(+) A-I      intronic chr4:91334963(+) A-I      intronic chr4:91361158(+) A-I      intronic chr4:92309242(+) A-I      intronic chr4:91853769(+) A-I      intronic chr4:91731318(+) A-I      intronic chr4:92267274(+) A-I      intronic chr4:91235887(+) A-I      intronic chr4:91344802(+) A-I      intronic chr4:92287446(+) A-I      intronic chr4:92288187(+) A-I      intronic chr4:91864853(+) A-I      intronic chr4:92166977(+) A-I      intronic chr4:91919441(+) A-I      intronic chr4:91885644(+) A-I      intronic chr4:92167013(+) A-I      intronic chr4:91853793(+) A-I      intronic chr4:91450555(+) A-I      intronic chr4:92288347(+) A-I      intronic chr4:91281560(+) A-I      intronic chr4:91960441(+) A-I      intronic chr4:91139149(+) A-I      intronic chr4:92056090(+) A-I      intronic chr4:91867662(+) A-I      intronic chr4:91864750(+) A-I      intronic chr4:91343675(+) A-I      intronic chr4:92115250(+) A-I      intronic chr4:91343604(+) A-I      intronic chr4:91853792(+) A-I      intronic chr4:91853832(+) A-I      intronic chr4:92352898(+) A-I      intronic chr4:92266333(+) A-I      intronic chr4:91481028(+) A-I      intronic chr4:92056052(+) A-I      intronic chr4:91846130(+) A-I      intronic chr4:91409052(+) A-I      intronic chr4:91309970(+) A-I      intronic chr4:92287270(+) A-I      intronic chr4:92344321(+) A-I      intronic chr4:92168197(+) A-I      intronic chr4:92288206(+) A-I      intronic chr4:91322802(+) A-I      intronic chr4:91968129(+) A-I      intronic chr4:92267413(+) A-I      intronic chr4:92168994(+) A-I      intronic chr4:91853817(+) A-I      intronic chr4:92266342(+) A-I      intronic chr4:91853880(+) A-I      intronic chr4:91864800(+) A-I      intronic chr4:91853859(+) A-I      intronic chr4:91435827(+) A-I      intronic chr4:91064923(+) A-I      intronic chr4:91853891(+) A-I      intronic chr4:91281595(+) A-I      intronic chr4:91193978(+) A-I      intronic chr4:91851609(+) A-I      intronic chr4:91481001(+) A-I      intronic chr4:91435846(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCSER1	chr4:91048831-91048832(+) m6A 5'UTR       22608085 chr4:91229691-91229692(+) m6A CDS       22608085 chr4:91229740-91229741(+) m6A CDS       22608085 chr4:91229755-91229756(+) m6A CDS       24981863//22608085 chr4:91229765-91229766(+) m6A CDS       24981863//22608085 chr4:91229776-91229777(+) m6A CDS       24981863//22608085 chr4:91229934-91229935(+) m6A CDS       22608085 chr4:91229939-91229940(+) m6A CDS       22608085 chr4:91230200-91230201(+) m6A CDS       22608085 chr4:91230350-91230351(+) m6A CDS       22608085 chr4:91230361-91230362(+) m6A CDS       22608085 chr4:91230371-91230372(+) m6A CDS       22608085 chr4:91230452-91230453(+) m6A CDS       22608085 chr4:91230496-91230497(+) m6A CDS       22608085 chr4:91230584-91230585(+) m6A CDS       22608085 chr4:91230596-91230597(+) m6A CDS       22608085 chr4:91230613-91230614(+) m6A CDS       22608085 chr4:91230649-91230650(+) m6A CDS       22608085 chr4:91230725-91230726(+) m6A CDS       22608085 chr4:92519843-92519844(+) m6A CDS       24981863 chr4:92519848-92519849(+) m6A CDS       24981863 chr4:92519891-92519892(+) m6A CDS       24981863 chr4:92519898-92519899(+) m6A CDS       24981863 chr4:92519916-92519917(+) m6A CDS       24981863 chr4:92519929-92519930(+) m6A CDS       24981863 chr4:92519938-92519939(+) m6A CDS       24981863 chr4:92519963-92519964(+) m6A CDS       24981863 chr4:92520010-92520011(+) m6A CDS       24981863//22608085 chr4:92520039-92520040(+) m6A CDS       24981863 chr4:92520047-92520048(+) m6A CDS       24981863 chr4:92520096-92520097(+) m6A CDS       24981863 chr4:92520184-92520185(+) m6A CDS       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548d-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	CCSER1	Exosome Blood     - Nucleus HeLa-S3 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID	Function	Link
RNAInter	hsa-miR-548d-5p	Atorvastatin 60823 Drug interaction    RC00007234 D-Glucose 5793 Drug interaction    RC00007233 cis-Diaminedichloroplatinum 2767 Drug interaction    RC00007232

Resource	Symbol	Drug Name	PubChem ID	PMID
NoncoRNA	hsa-miR-548d-5p	Etoposide 36462       23028896

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548d-5p
Interactor2: CCSER1

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.