Basic Information:

  VIRBase ID:  

HHID00108431

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548d-5p:  MIMAT0004812          UNC80:  NM_182587     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548d-5p	UNC80
miRBase Accession/Entrez ID	MIMAT0004812	285175
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C2orf21//UNC-80

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548d-5p	rs1240978917 chr8:123348085    G/A rs1370161434 chr8:123348096    C/A rs1423052174 chr8:123348086    G/A rs1039169216 chr17:67471540    G/A rs1039169216 chr17:67471540    G/T rs543252291 chr17:67471553    A/G rs1196924094 chr8:123348101    A/G rs756308753 chr8:123348103    T/C rs768094101 chr17:67471554    T/G rs899430888 chr17:67471556    A/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	UNC80	chr2:210829898(+) A-I      intronic chr2:210829904(+) A-I      intronic chr2:210829905(+) A-I      intronic chr2:210829910(+) A-I      intronic chr2:210656985(+) A-I      intronic chr2:210656983(+) A-I      intronic chr2:210656863(+) A-I      intronic chr2:210656978(+) A-I      intronic chr2:210815462(+) A-I      intronic chr2:210730163(+) A-I      intronic chr2:210730160(+) A-I      intronic chr2:210730149(+) A-I      intronic chr2:210723327(+) A-I      intronic chr2:210656803(+) A-I      intronic chr2:210656398(+) A-I      intronic chr2:210673176(+) A-I      intronic chr2:210673180(+) A-I      intronic chr2:210816225(+) A-I      intronic chr2:210673072(+) A-I      intronic chr2:210792980(+) A-I      intronic chr2:210829975(+) A-I      intronic chr2:210830284(+) A-I      intronic chr2:210815851(+) A-I      intronic chr2:210673032(+) A-I      intronic chr2:210810827(+) A-I      intronic chr2:210673101(+) A-I      intronic chr2:210656766(+) A-I      intronic chr2:210818165(+) A-I      intronic chr2:210817917(+) A-I      intronic chr2:210721659(+) A-I      intronic chr2:210815857(+) A-I      intronic chr2:210673031(+) A-I      intronic chr2:210673160(+) A-I      intronic chr2:210816147(+) A-I      intronic chr2:210746889(+) A-I      intronic chr2:210656786(+) A-I      intronic chr2:210816220(+) A-I      intronic chr2:210815400(+) A-I      intronic chr2:210672361(+) A-I      intronic chr2:210815338(+) A-I      intronic chr2:210830040(+) A-I      intronic chr2:210656367(+) A-I      intronic chr2:210656773(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	UNC80	chr2:210841780(+) A-I exon CDS    19478186

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548d-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	UNC80	Exosome Blood     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID	Function	Link
RNAInter	hsa-miR-548d-5p	Atorvastatin 60823 Drug interaction    RC00007234 D-Glucose 5793 Drug interaction    RC00007233 cis-Diaminedichloroplatinum 2767 Drug interaction    RC00007232

Resource	Symbol	Drug Name	PubChem ID	PMID
NoncoRNA	hsa-miR-548d-5p	Etoposide 36462       23028896

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548d-5p
Interactor2: UNC80

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.