Basic Information:

  VIRBase ID:  

HHID00108302

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548c-5p:  MIMAT0004806          GPALPP1:  NM_001316952     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548c-5p	GPALPP1
miRBase Accession/Entrez ID	MIMAT0004806	55425
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	AD029//bA245H20.2//KIAA1704//LSR7

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548c-5p	rs1188707087 chr12:64622544    C/A rs1188707087 chr12:64622544    C/T rs1371697031 chr12:64622552    G/A rs1391518567 chr12:64622541    T/C rs750959106 chr12:64622554    C/T rs1202383522 chr12:64622535    A/G rs374151873 chr12:64622540    A/G rs540698062 chr12:64622545    G/A rs764336601 chr12:64622536    A/C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPALPP1	chr13:45591002(+) A-I      intronic chr13:45591000(+) A-I      intronic chr13:45590970(+) A-I      intronic chr13:45590969(+) A-I      intronic chr13:45605180(+) A-I      3'UTR chr13:45605176(+) A-I      3'UTR chr13:45590994(+) A-I      intronic chr13:45591019(+) A-I      intronic chr13:45605187(+) A-I      3'UTR chr13:45570280(+) A-I      intronic chr13:45570299(+) A-I      intronic chr13:45570304(+) A-I      intronic chr13:45570325(+) A-I      intronic chr13:45580082(+) A-I      intronic chr13:45573791(+) A-I      intronic chr13:45573832(+) A-I      intronic chr13:45594615(+) A-I      intronic chr13:45573856(+) A-I      intronic chr13:45573857(+) A-I      intronic chr13:45574297(+) A-I      intronic chr13:45574370(+) A-I      intronic chr13:45574435(+) A-I      intronic chr13:45567515(+) A-I      intronic chr13:45574438(+) A-I      intronic chr13:45576005(+) A-I      intronic chr13:45590902(+) A-I      intronic chr13:45594613(+) A-I      intronic chr13:45575897(+) A-I      intronic chr13:45598875(+) A-I      intronic chr13:45594616(+) A-I      intronic chr13:45598861(+) A-I      intronic chr13:45594642(+) A-I      intronic chr13:45598814(+) A-I      intronic chr13:45598835(+) A-I      intronic chr13:45598943(+) A-I      intronic chr13:45574444(+) A-I      intronic chr13:45574490(+) A-I      intronic chr13:45598695(+) A-I      intronic chr13:45574520(+) A-I      intronic chr13:45590794(+) A-I      intronic chr13:45569093(+) A-I      intronic chr13:45575917(+) A-I      intronic chr13:45569150(+) A-I      intronic chr13:45597117(+) A-I      intronic chr13:45598639(+) A-I      intronic chr13:45579400(+) A-I      intronic chr13:45569176(+) A-I      intronic chr13:45570447(+) A-I      intronic chr13:45570674(+) A-I      intronic chr13:45567497(+) A-I      intronic chr13:45567509(+) A-I      intronic chr13:45568219(+) A-I      intronic chr13:45567516(+) A-I      intronic chr13:45569149(+) A-I      intronic chr13:45567563(+) A-I      intronic chr13:45569066(+) A-I      intronic chr13:45605197(+) A-I      3'UTR chr13:45605193(+) A-I      3'UTR chr13:45605270(+) A-I      3'UTR chr13:45604667(+) A-I      3'UTR chr13:45605273(+) A-I      3'UTR chr13:45605246(+) A-I      3'UTR chr13:45605240(+) A-I      3'UTR chr13:45605232(+) A-I      3'UTR chr13:45605271(+) A-I      3'UTR chr13:45605212(+) A-I      3'UTR chr13:45599359(+) A-I      intronic chr13:45575916(+) A-I      intronic chr13:45597115(+) A-I      intronic chr13:45574504(+) A-I      intronic chr13:45568116(+) A-I      intronic chr13:45570308(+) A-I      intronic chr13:45580149(+) A-I      intronic chr13:45598902(+) A-I      intronic chr13:45576310(+) A-I      intronic chr13:45570232(+) A-I      intronic chr13:45575934(+) A-I      intronic chr13:45576090(+) A-I      intronic chr13:45575946(+) A-I      intronic chr13:45575956(+) A-I      intronic chr13:45565532(+) A-I      intronic chr13:45569249(+) A-I      intronic chr13:45579888(+) A-I      intronic chr13:45570718(+) A-I      intronic chr13:45568242(+) A-I      intronic chr13:45598582(+) A-I      intronic chr13:45598973(+) A-I      intronic chr13:45594113(+) A-I      intronic chr13:45580086(+) A-I      intronic chr13:45598885(+) A-I      intronic chr13:45574318(+) A-I      intronic chr13:45598969(+) A-I      intronic chr13:45597133(+) A-I      intronic chr13:45569106(+) A-I      intronic chr13:45570870(+) A-I      intronic chr13:45570680(+) A-I      intronic chr13:45570340(+) A-I      intronic chr13:45580081(+) A-I      intronic chr13:45569089(+) A-I      intronic chr13:45574357(+) A-I      intronic chr13:45565503(+) A-I      intronic chr13:45597065(+) A-I      intronic chr13:45568570(+) A-I      intronic chr13:45570827(+) A-I      intronic chr13:45598552(+) A-I      intronic chr13:45598852(+) A-I      intronic chr13:45575920(+) A-I      intronic chr13:45578877(+) A-I      intronic chr13:45569127(+) A-I      intronic chr13:45570311(+) A-I      intronic chr13:45573990(+) A-I      intronic chr13:45598547(+) A-I      intronic chr13:45568606(+) A-I      intronic chr13:45570212(+) A-I      intronic chr13:45598708(+) A-I      intronic chr13:45570798(+) A-I      intronic chr13:45575921(+) A-I      intronic chr13:45577310(+) A-I      intronic chr13:45598809(+) A-I      intronic chr13:45597029(+) A-I      intronic chr13:45579926(+) A-I      intronic chr13:45574418(+) A-I      intronic chr13:45598617(+) A-I      intronic chr13:45569115(+) A-I      intronic chr13:45570688(+) A-I      intronic chr13:45570256(+) A-I      intronic chr13:45598580(+) A-I      intronic chr13:45598956(+) A-I      intronic chr13:45570264(+) A-I      intronic chr13:45596988(+) A-I      intronic chr13:45576338(+) A-I      intronic chr13:45573975(+) A-I      intronic chr13:45575873(+) A-I      intronic chr13:45598535(+) A-I      intronic chr13:45578883(+) A-I      intronic chr13:45576328(+) A-I      intronic chr13:45570375(+) A-I      intronic chr13:45598808(+) A-I      intronic chr13:45569167(+) A-I      intronic chr13:45605009(+) A-I      3'UTR chr13:45605241(+) A-I      3'UTR chr13:45605029(+) A-I      3'UTR chr13:45605171(+) A-I      3'UTR chr13:45605170(+) A-I      3'UTR chr13:45605194(+) A-I      3'UTR chr13:45605274(+) A-I      3'UTR chr13:45605248(+) A-I      3'UTR chr13:45605184(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPALPP1	chr13:45563693-45563694(+) m6A 5'UTR       24981863 chr13:45563756-45563757(+) m6A 5'UTR//exon       24284625//24981863 chr13:45563799-45563800(+) m6A CDS//exon       24284625//24981863 chr13:45563809-45563810(+) m6A CDS//exon       24284625 chr13:45563843-45563844(+) m6A CDS//exon       24284625 chr13:45563865-45563866(+) m6A CDS//exon       - chr13:45583007-45583008(+) m6A 5'UTR//CDS       24981863//27773535 chr13:45589089-45589090(+) m6A 5'UTR//CDS       24981863//27773535 chr13:45589093-45589094(+) m6A 5'UTR//CDS       24981863 chr13:45589121-45589122(+) m6A 5'UTR//CDS       24981863//27773535 chr13:45589139-45589140(+) m6A 5'UTR//CDS       24981863//27773535 chr13:45589199-45589200(+) m6A CDS       24981863//27773535 chr13:45589577-45589578(+) m6A CDS       24981863//27773535 chr13:45589607-45589608(+) m6A CDS       24981863//27773535 chr13:45589627-45589628(+) m6A CDS       24981863//27773535 chr13:45589647-45589648(+) m6A CDS       24981863//27773535 chr13:45589695-45589696(+) m6A CDS       24981863//27773535 chr13:45594467-45594468(+) m6A CDS       24981863//27773535//22608085 chr13:45594508-45594509(+) m6A CDS       24981863//27773535//22608085 chr13:45594535-45594536(+) m6A CDS       24981863//27773535//22608085 chr13:45601947-45601948(+) m6A CDS       24981863//27773535//22608085 chr13:45601986-45601987(+) m6A CDS       24981863//27773535//22608085 chr13:45602092-45602093(+) m6A CDS       24981863//27773535//22608085 chr13:45602097-45602098(+) m6A CDS       27773535//22608085 chr13:45602183-45602184(+) m6A 3'UTR//intron       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548c-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Urine     -
	GPALPP1	Cytosol K562 cells     - Exosome Blood     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID	Function	Link
RNAInter	hsa-miR-548c-5p	Emodin 3220 Drug interaction    RC00007211 Sorafenib 216239 Drug interaction    RC00007212

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsa-miR-548c-5p	l-685,458       5479543

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548c-5p
Interactor2: GPALPP1

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.