Detail Information

Basic Information:


  VIRBase ID:  

HHID00108298

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548c-5p:           GPR85:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548c-5p GPR85
miRBase
Accession/Entrez ID		 MIMAT0004806 54329
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - SREB//SREB2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548c-5p
rs1188707087 chr12:64622544    C/A
rs1188707087 chr12:64622544    C/T
rs1371697031 chr12:64622552    G/A
rs1391518567 chr12:64622541    T/C
rs750959106 chr12:64622554    C/T
rs1202383522 chr12:64622535    A/G
rs374151873 chr12:64622540    A/G
rs540698062 chr12:64622545    G/A
rs764336601 chr12:64622536    A/C

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GPR85
chr7:112723192-112723193(-) m6A 3'UTR       24981863
chr7:112723208-112723209(-) m6A 3'UTR       24981863
chr7:112723237-112723238(-) m6A 3'UTR       24981863
chr7:112723245-112723246(-) m6A 3'UTR       24981863
chr7:112723266-112723267(-) m6A 3'UTR       24981863
chr7:112723312-112723313(-) m6A 3'UTR       24981863
chr7:112723326-112723327(-) m6A 3'UTR       24981863
chr7:112723336-112723337(-) m6A 3'UTR       24981863
chr7:112723406-112723407(-) m6A 3'UTR       24981863
chr7:112723439-112723440(-) m6A 3'UTR       24981863
chr7:112723444-112723445(-) m6A 3'UTR       24981863
chr7:112723985-112723986(-) m6A CDS       24981863
chr7:112724091-112724092(-) m6A CDS       -
chr7:112724096-112724097(-) m6A CDS       -
chr7:112724337-112724338(-) m6A CDS       24981863//27773535
chr7:112724505-112724506(-) m6A CDS       24981863//22608085
chr7:112724514-112724515(-) m6A CDS       24981863//22608085
chr7:112724628-112724629(-) m6A CDS       24981863//22608085
chr7:112724707-112724708(-) m6A CDS       24981863//22608085
chr7:112724768-112724769(-) m6A CDS       24981863//22608085
chr7:112724812-112724813(-) m6A 5'UTR//exon       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548c-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Urine     -
GPR85
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-548c-5p
Emodin 3220 Drug interaction    RC00007211
Sorafenib 216239 Drug interaction    RC00007212
Resource Symbol Drug Name PubChem ID
RNAactDrug hsa-miR-548c-5p
l-685,458       5479543

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548c-5p
Interactor2: GPR85

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

Starting a new search, please wait ...