Detail Information

Basic Information:


  VIRBase ID:  

HHID00108287

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548c-5p:           FLRT3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548c-5p FLRT3
miRBase
Accession/Entrez ID		 MIMAT0004806 23767
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HH21

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548c-5p
rs1188707087 chr12:64622544    C/A
rs1188707087 chr12:64622544    C/T
rs1371697031 chr12:64622552    G/A
rs1391518567 chr12:64622541    T/C
rs750959106 chr12:64622554    C/T
rs1202383522 chr12:64622535    A/G
rs374151873 chr12:64622540    A/G
rs540698062 chr12:64622545    G/A
rs764336601 chr12:64622536    A/C

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FLRT3
chr20:14303689-14303690(-) m6A 3'UTR       27773535
chr20:14303699-14303700(-) m6A 3'UTR       27773535
chr20:14303729-14303730(-) m6A 3'UTR       27773535
chr20:14303754-14303755(-) m6A 3'UTR       27773535
chr20:14303767-14303768(-) m6A 3'UTR       27773535
chr20:14305919-14305920(-) m6A 3'UTR       24981863//27773535
chr20:14305989-14305990(-) m6A 3'UTR       24981863//26404942//27773535
chr20:14306052-14306053(-) m6A 3'UTR       24981863//26404942//27773535
chr20:14306103-14306104(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085
chr20:14306118-14306119(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085
chr20:14306136-14306137(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085
chr20:14306159-14306160(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085
chr20:14306181-14306182(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22575960//22608085
chr20:14306192-14306193(-) m6A 3'UTR       24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:14306224-14306225(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:14306239-14306240(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr20:14306278-14306279(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14306346-14306347(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306378-14306379(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14306404-14306405(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14306467-14306468(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14306581-14306582(-) m6A CDS       24209618//24981863//27773535//22608085
chr20:14306592-14306593(-) m6A CDS       24209618//24981863//27773535//22608085
chr20:14306651-14306652(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306657-14306658(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306675-14306676(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306702-14306703(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306789-14306790(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306826-14306827(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306841-14306842(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306868-14306869(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr20:14306924-14306925(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14306948-14306949(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14306974-14306975(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14306991-14306992(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14307015-14307016(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14307082-14307083(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14307099-14307100(-) m6A CDS       24209618//25456834//24981863//26404942//27773535//22608085
chr20:14307268-14307269(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14307409-14307410(-) m6A CDS       24981863//26404942//22608085
chr20:14307424-14307425(-) m6A CDS       24981863//26404942//22608085
chr20:14307517-14307518(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14307526-14307527(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14307615-14307616(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14307626-14307627(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14307697-14307698(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14307800-14307801(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14307910-14307911(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14307952-14307953(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14308115-14308116(-) m6A CDS       24981863//26404942//27773535//22608085
chr20:14308169-14308170(-) m6A 5'UTR       24981863//27773535
chr20:14309688-14309689(-) m6A exon//intron       24981863//27773535
chr20:14309832-14309833(-) m6A 5'UTR//exon//intron       24981863
chr20:14318158-14318159(-) m6A 5'UTR//exon       24981863//27773535
chr20:14318195-14318196(-) m6A 5'UTR//exon       24981863//27773535
chr20:14318248-14318249(-) m6A 5'UTR//exon       25456834//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548c-5p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Urine     -
FLRT3
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-548c-5p
Emodin 3220 Drug interaction    RC00007211
Sorafenib 216239 Drug interaction    RC00007212
Resource Symbol Drug Name PubChem ID
RNAactDrug hsa-miR-548c-5p
l-685,458       5479543

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548c-5p
Interactor2: FLRT3

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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