Detail Information

Basic Information:


  VIRBase ID:  

HHID00108161

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-590-3p:           C2orf49:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-590-3p C2orf49
miRBase
Accession/Entrez ID		 MIMAT0004801 79074
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - asw

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-590-3p
rs1435070247 chr7:74191262    G/T
rs1554709913 chr7:74191261    T/C
rs1554709916 chr7:74191263    T/C
rs1554709918 chr7:74191268    G/A
rs555659597 chr7:74191273    T/G
rs6971711 chr7:74191269    C/T
rs781868890 chr7:74191265    T/C
rs781868890 chr7:74191265    T/G
rs782545428 chr7:74191272    GTC/G
rs782782687 chr7:74191264    A/G
rs1554709912 chr7:74191255    AT/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C2orf49
chr2:105962346(+) A-I      3'UTR
chr2:105962332(+) A-I      3'UTR
chr2:105962313(+) A-I      3'UTR
chr2:105962341(+) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C2orf49
chr2:105956043-105956044(+) m6A CDS       27773535
chr2:105956057-105956058(+) m6A CDS       27773535
chr2:105956073-105956074(+) m6A CDS       27773535
chr2:105956079-105956080(+) m6A CDS       27773535
chr2:105956176-105956177(+) m6A CDS       24981863//27773535//22608085
chr2:105956198-105956199(+) m6A CDS       24981863//27773535//22608085
chr2:105959334-105959335(+) m6A CDS       24981863//27773535//22608085
chr2:105959389-105959390(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:105959519-105959520(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:105959532-105959533(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:105959553-105959554(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:105959558-105959559(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:105959626-105959627(+) m6A CDS       24284625//24209618//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-590-3p
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
C2orf49
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-590-3p
Interactor2: C2orf49

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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