Detail Information

Basic Information:


  VIRBase ID:  

HHID00107971

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548b-5p:           UNC80:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548b-5p UNC80
miRBase
Accession/Entrez ID		 MIMAT0004798 285175
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C2orf21//UNC-80

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548b-5p
rs1180266201 chr6:119069102    A/G
rs1338611711 chr6:119069100    C/T
rs188182113 chr6:119069098    G/A
rs188182113 chr6:119069098    G/C
rs1158490090 chr6:119069118    T/C
rs1414502200 chr6:119069112    T/A
rs1472929879 chr6:119069115    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR UNC80
chr2:210829898(+) A-I      intronic
chr2:210829904(+) A-I      intronic
chr2:210829905(+) A-I      intronic
chr2:210829910(+) A-I      intronic
chr2:210656985(+) A-I      intronic
chr2:210656983(+) A-I      intronic
chr2:210656863(+) A-I      intronic
chr2:210656978(+) A-I      intronic
chr2:210815462(+) A-I      intronic
chr2:210730163(+) A-I      intronic
chr2:210730160(+) A-I      intronic
chr2:210730149(+) A-I      intronic
chr2:210723327(+) A-I      intronic
chr2:210656803(+) A-I      intronic
chr2:210656398(+) A-I      intronic
chr2:210673176(+) A-I      intronic
chr2:210673180(+) A-I      intronic
chr2:210816225(+) A-I      intronic
chr2:210673072(+) A-I      intronic
chr2:210792980(+) A-I      intronic
chr2:210829975(+) A-I      intronic
chr2:210830284(+) A-I      intronic
chr2:210815851(+) A-I      intronic
chr2:210673032(+) A-I      intronic
chr2:210810827(+) A-I      intronic
chr2:210673101(+) A-I      intronic
chr2:210656766(+) A-I      intronic
chr2:210818165(+) A-I      intronic
chr2:210817917(+) A-I      intronic
chr2:210721659(+) A-I      intronic
chr2:210815857(+) A-I      intronic
chr2:210673031(+) A-I      intronic
chr2:210673160(+) A-I      intronic
chr2:210816147(+) A-I      intronic
chr2:210746889(+) A-I      intronic
chr2:210656786(+) A-I      intronic
chr2:210816220(+) A-I      intronic
chr2:210815400(+) A-I      intronic
chr2:210672361(+) A-I      intronic
chr2:210815338(+) A-I      intronic
chr2:210830040(+) A-I      intronic
chr2:210656367(+) A-I      intronic
chr2:210656773(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED UNC80
chr2:210841780(+) A-I exon CDS    19478186

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548b-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
UNC80
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548b-5p
Interactor2: UNC80

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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