Detail Information

Basic Information:


  VIRBase ID:  

HHID00107943

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548b-5p:           ZNF608:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548b-5p ZNF608
miRBase
Accession/Entrez ID		 MIMAT0004798 57507
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - NY-REN-36

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548b-5p
rs1180266201 chr6:119069102    A/G
rs1338611711 chr6:119069100    C/T
rs188182113 chr6:119069098    G/A
rs188182113 chr6:119069098    G/C
rs1158490090 chr6:119069118    T/C
rs1414502200 chr6:119069112    T/A
rs1472929879 chr6:119069115    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF608
chr5:124017917(-) A-I      intronic
chr5:124029801(-) A-I      intronic
chr5:124029797(-) A-I      intronic
chr5:124029765(-) A-I      intronic
chr5:124029754(-) A-I      intronic
chr5:124018010(-) A-I      intronic
chr5:124017967(-) A-I      intronic
chr5:124017930(-) A-I      intronic
chr5:124000867(-) A-I      intronic
chr5:124029807(-) A-I      intronic
chr5:124029857(-) A-I      intronic
chr5:124029959(-) A-I      intronic
chr5:124057377(-) A-I      intronic
chr5:124057572(-) A-I      intronic
chr5:124058796(-) A-I      intronic
chr5:124067395(-) A-I      intronic
chr5:124067436(-) A-I      intronic
chr5:124067475(-) A-I      intronic
chr5:124067517(-) A-I      intronic
chr5:124067419(-) A-I      intronic
chr5:124067274(-) A-I      intronic
chr5:124031790(-) A-I      intronic
chr5:124067267(-) A-I      intronic
chr5:123973992(-) A-I      intronic
chr5:124058829(-) A-I      intronic
chr5:124067177(-) A-I      intronic
chr5:124067457(-) A-I      intronic
chr5:124067044(-) A-I      intronic
chr5:124026938(-) A-I      intronic
chr5:124031352(-) A-I      intronic
chr5:124067273(-) A-I      intronic
chr5:124058791(-) A-I      intronic
chr5:123978386(-) A-I      intronic
chr5:124058920(-) A-I      intronic
chr5:124067456(-) A-I      intronic
chr5:124026284(-) A-I      intronic
chr5:124058862(-) A-I      intronic
chr5:124029882(-) A-I      intronic
chr5:124059318(-) A-I      intronic
chr5:124007418(-) A-I      intronic
chr5:124066989(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF608
chr5:124018039(-) A-G intron -    22484847
chr5:124029687(-) C-A intron -    22484847
chr5:124031313(-) A-T intron -    22484847
chr5:124031438(-) T-C intron -    22484847
chr5:124031790(-) A-G intron -    22484847
chr5:124058862(-) A-G intron -    22484847
chr5:124059259(-) A-G intron -    22484847
chr5:124059318(-) A-G intron -    22484847
chr5:124066989(-) A-G intron -    22484847
chr5:124067044(-) A-G intron -    22484847
chr5:124067391(-) A-G intron -    22484847
chr5:124067456(-) A-G intron -    22484847
chr5:124067457(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF608
chr5:123979274-123979275(-) m6A 3'UTR//CDS//exon       27773535
chr5:123979313-123979314(-) m6A 3'UTR//CDS//exon       27773535
chr5:123980077-123980078(-) m6A 3'UTR//CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123980088-123980089(-) m6A 3'UTR//CDS//intron       24209618//25456834//24981863//28052920//27773535//22608085
chr5:123980097-123980098(-) m6A 3'UTR//CDS//intron       24209618//25456834//24981863//28052920//27773535//22608085
chr5:123980107-123980108(-) m6A 3'UTR//CDS//intron       24209618//25456834//24981863//28052920//27773535//22608085
chr5:123980239-123980240(-) m6A 3'UTR//CDS//intron       24209618//24981863//27773535//22608085
chr5:123980282-123980283(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123980338-123980339(-) m6A CDS//intron       24981863//27773535//22608085
chr5:123982374-123982375(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123982393-123982394(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123982403-123982404(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123982417-123982418(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123982462-123982463(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123982538-123982539(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123982547-123982548(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123982572-123982573(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123982582-123982583(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123982644-123982645(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123982649-123982650(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123982699-123982700(-) m6A CDS//intron       24209618//25456834//24981863//28052920//27773535//22608085
chr5:123982712-123982713(-) m6A CDS//intron       24209618//25456834//24981863//28052920//27773535//22608085
chr5:123982744-123982745(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123982770-123982771(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123982807-123982808(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123982866-123982867(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123982918-123982919(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123982951-123982952(-) m6A CDS//intron       24209618//24981863//27773535
chr5:123983158-123983159(-) m6A CDS//intron       27773535
chr5:123983254-123983255(-) m6A CDS//intron       24209618//27773535//22608085
chr5:123983276-123983277(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123983404-123983405(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123983475-123983476(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123983554-123983555(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27773536//22608085
chr5:123983562-123983563(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27773536//22608085
chr5:123983614-123983615(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123983647-123983648(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123983671-123983672(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123983718-123983719(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123983775-123983776(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123983786-123983787(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123983883-123983884(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123983893-123983894(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123983899-123983900(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123983979-123983980(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984025-123984026(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984064-123984065(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984069-123984070(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984170-123984171(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984181-123984182(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984286-123984287(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984298-123984299(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984328-123984329(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984337-123984338(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984400-123984401(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984445-123984446(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984458-123984459(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984465-123984466(-) m6A CDS//intron       24209618//24981863//27773535//22608085
chr5:123984529-123984530(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123984544-123984545(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123984550-123984551(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123984571-123984572(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr5:123984635-123984636(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27773536//22608085
chr5:123984694-123984695(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27773536//22608085
chr5:123985332-123985333(-) m6A 5'UTR//CDS//exon       24209618//27773535
chr5:123985342-123985343(-) m6A 5'UTR//CDS//exon       24209618//27773535
chr5:123985359-123985360(-) m6A 5'UTR//CDS//exon       24209618//27773535
chr5:124001986-124001987(-) m6A exon//intron       27773535
chr5:124002066-124002067(-) m6A exon//intron       27773535
chr5:124036715-124036716(-) m6A 5'UTR//CDS//exon       27773535
chr5:124036751-124036752(-) m6A 5'UTR//CDS//exon       24981863//27773535
chr5:124036758-124036759(-) m6A 5'UTR//CDS//exon       24981863//27773535
chr5:124036829-124036830(-) m6A 5'UTR//CDS//exon       24981863//27773535//27773536
chr5:124036845-124036846(-) m6A 5'UTR//CDS//exon       24981863//27773535//27773536
chr5:124079784-124079785(-) m6A CDS//exon//intron       24209618//25456834//24981863//27773535//27773536//22608085
chr5:124079791-124079792(-) m6A CDS//exon//intron       24209618//25456834//24981863//27773535//27773536//22608085
chr5:124079849-124079850(-) m6A CDS//exon//intron       24209618//25456834//24981863//27773535//27773536//22608085
chr5:124080044-124080045(-) m6A CDS//exon//intron       24209618//25456834//24981863//27773535//27773536//22608085
chr5:124080185-124080186(-) m6A 5'UTR//CDS       24209618//24981863//27773535//27773536//22608085
chr5:124080351-124080352(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr5:124080381-124080382(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr5:124080551-124080552(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr5:124080671-124080672(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr5:124080826-124080827(-) m6A 5'UTR//exon       24209618//25456834//24981863//27773535//22608085
chr5:124080848-124080849(-) m6A 5'UTR//exon       24209618//25456834//24981863//27773535//22608085
chr5:124080854-124080855(-) m6A 5'UTR//exon       24209618//25456834//24981863//27773535//22608085
chr5:124080900-124080901(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr5:124082087-124082088(-) m6A 5'UTR//intron       24209618//24981863//27773535//22608085
chr5:124082136-124082137(-) m6A 5'UTR//intron       24209618//24981863//27773535//22608085
chr5:124082165-124082166(-) m6A 5'UTR//intron       24209618//24981863//27773535//22608085
chr5:124082201-124082202(-) m6A 5'UTR//intron       24209618//24981863//27773535//22608085
chr5:124082220-124082221(-) m6A 5'UTR//intron       24209618//24981863//27773535//22608085
chr5:124082234-124082235(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr5:124082262-124082263(-) m6A 5'UTR//intron       24981863//27773535//22608085
chr5:124084227-124084228(-) m6A 5'UTR       24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548b-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
ZNF608
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548b-5p
Interactor2: ZNF608

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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