Detail Information

Basic Information:


  VIRBase ID:  

HHID00107926

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548b-5p:           ZBTB11:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548b-5p ZBTB11
miRBase
Accession/Entrez ID		 MIMAT0004798 27107
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - MRT69//ZNF-U69274//ZNF913

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548b-5p
rs1180266201 chr6:119069102    A/G
rs1338611711 chr6:119069100    C/T
rs188182113 chr6:119069098    G/A
rs188182113 chr6:119069098    G/C
rs1158490090 chr6:119069118    T/C
rs1414502200 chr6:119069112    T/A
rs1472929879 chr6:119069115    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZBTB11
chr3:101382134(-) A-I      intronic
chr3:101382117(-) A-I      intronic
chr3:101377239(-) A-I      intronic
chr3:101377234(-) A-I      intronic
chr3:101377226(-) A-I      intronic
chr3:101377216(-) A-I      intronic
chr3:101377191(-) A-I      intronic
chr3:101377207(-) A-I      intronic
chr3:101381368(-) A-I      intronic
chr3:101385858(-) A-I      intronic
chr3:101393084(-) A-I      intronic
chr3:101393103(-) A-I      intronic
chr3:101393338(-) A-I      intronic
chr3:101377208(-) A-I      intronic
chr3:101377202(-) A-I      intronic
chr3:101377198(-) A-I      intronic
chr3:101369294(-) A-I      3'UTR
chr3:101381764(-) A-I      intronic
chr3:101381756(-) A-I      intronic
chr3:101381721(-) A-I      intronic
chr3:101381344(-) A-I      intronic
chr3:101391441(-) A-I      intronic
chr3:101388847(-) A-I      intronic
chr3:101379946(-) A-I      intronic
chr3:101379950(-) A-I      intronic
chr3:101388840(-) A-I      intronic
chr3:101388143(-) A-I      intronic
chr3:101381340(-) A-I      intronic
chr3:101381328(-) A-I      intronic
chr3:101379956(-) A-I      intronic
chr3:101379970(-) A-I      intronic
chr3:101377130(-) A-I      intronic
chr3:101387924(-) A-I      intronic
chr3:101386157(-) A-I      intronic
chr3:101386151(-) A-I      intronic
chr3:101385808(-) A-I      intronic
chr3:101382622(-) A-I      intronic
chr3:101382061(-) A-I      intronic
chr3:101382054(-) A-I      intronic
chr3:101381778(-) A-I      intronic
chr3:101391448(-) A-I      intronic
chr3:101391460(-) A-I      intronic
chr3:101392460(-) A-I      intronic
chr3:101392463(-) A-I      intronic
chr3:101392496(-) A-I      intronic
chr3:101392518(-) A-I      intronic
chr3:101392950(-) A-I      intronic
chr3:101393124(-) A-I      intronic
chr3:101380034(-) A-I      intronic
chr3:101379884(-) A-I      intronic
chr3:101380026(-) A-I      intronic
chr3:101378033(-) A-I      intronic
chr3:101377408(-) A-I      intronic
chr3:101376287(-) A-I      intronic
chr3:101376281(-) A-I      intronic
chr3:101376115(-) A-I      intronic
chr3:101375922(-) A-I      intronic
chr3:101375902(-) A-I      intronic
chr3:101375859(-) A-I      intronic
chr3:101375705(-) A-I      intronic
chr3:101373842(-) A-I      intronic
chr3:101379910(-) A-I      intronic
chr3:101380002(-) A-I      intronic
chr3:101387387(-) A-I      intronic
chr3:101385706(-) A-I      intronic
chr3:101373731(-) A-I      intronic
chr3:101381212(-) A-I      intronic
chr3:101377286(-) A-I      intronic
chr3:101387435(-) A-I      intronic
chr3:101381383(-) A-I      intronic
chr3:101381620(-) A-I      intronic
chr3:101381673(-) A-I      intronic
chr3:101386103(-) A-I      intronic
chr3:101381722(-) A-I      intronic
chr3:101377292(-) A-I      intronic
chr3:101382003(-) A-I      intronic
chr3:101381684(-) A-I      intronic
chr3:101381674(-) A-I      intronic
chr3:101372800(-) A-I      intronic
chr3:101387390(-) A-I      intronic
chr3:101381813(-) A-I      intronic
chr3:101379812(-) A-I      intronic
chr3:101382612(-) A-I      intronic
chr3:101388811(-) A-I      intronic
chr3:101375863(-) A-I      intronic
chr3:101376087(-) A-I      intronic
chr3:101391504(-) A-I      intronic
chr3:101377253(-) A-I      intronic
chr3:101393038(-) A-I      intronic
chr3:101381138(-) A-I      intronic
chr3:101382532(-) A-I      intronic
chr3:101387915(-) A-I      intronic
chr3:101387445(-) A-I      intronic
chr3:101385867(-) A-I      intronic
chr3:101376298(-) A-I      intronic
chr3:101387235(-) A-I      intronic
chr3:101393841(-) A-I      intronic
chr3:101387292(-) A-I      intronic
chr3:101388037(-) A-I      intronic
chr3:101381640(-) A-I      intronic
chr3:101374754(-) A-I      intronic
chr3:101386156(-) A-I      intronic
chr3:101387306(-) A-I      intronic
chr3:101382135(-) A-I      intronic
chr3:101376105(-) A-I      intronic
chr3:101376735(-) A-I      intronic
chr3:101388936(-) A-I      intronic
chr3:101381856(-) A-I      intronic
chr3:101387386(-) A-I      intronic
chr3:101381851(-) A-I      intronic
chr3:101376274(-) A-I      intronic
chr3:101388810(-) A-I      intronic
chr3:101388866(-) A-I      intronic
chr3:101387308(-) A-I      intronic
chr3:101388851(-) A-I      intronic
chr3:101388944(-) A-I      intronic
chr3:101393016(-) A-I      intronic
chr3:101375944(-) A-I      intronic
chr3:101381055(-) A-I      intronic
chr3:101375711(-) A-I      intronic
chr3:101377395(-) A-I      intronic
chr3:101375743(-) A-I      intronic
chr3:101379871(-) A-I      intronic
chr3:101382055(-) A-I      intronic
chr3:101392961(-) A-I      intronic
chr3:101385641(-) A-I      intronic
chr3:101387979(-) A-I      intronic
chr3:101388945(-) A-I      intronic
chr3:101377464(-) A-I      intronic
chr3:101386102(-) A-I      intronic
chr3:101378044(-) A-I      intronic
chr3:101386022(-) A-I      intronic
chr3:101387223(-) A-I      intronic
chr3:101381206(-) A-I      intronic
chr3:101382182(-) A-I      intronic
chr3:101375721(-) A-I      intronic
chr3:101385759(-) A-I      intronic
chr3:101385821(-) A-I      intronic
chr3:101378079(-) A-I      intronic
chr3:101385666(-) A-I      intronic
chr3:101378066(-) A-I      intronic
chr3:101386148(-) A-I      intronic
chr3:101388888(-) A-I      intronic
chr3:101387236(-) A-I      intronic
chr3:101381153(-) A-I      intronic
chr3:101375885(-) A-I      intronic
chr3:101386134(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZBTB11
chr3:101381722(-) A-I intron -    22327324
chr3:101387349(-) A-I intron -    22327324
chr3:101387351(-) A-I intron -    22327324
chr3:101388810(-) A-I intron -    22327324
chr3:101388811(-) A-I intron -    22327324
chr3:101375743(-) A-G intron -    22484847
chr3:101375863(-) A-G intron -    22484847
chr3:101375885(-) A-G intron -    22484847
chr3:101375890(-) A-G intron -    22484847
chr3:101375941(-) A-G intron -    22484847
chr3:101375944(-) A-G intron -    22484847
chr3:101376087(-) A-G intron -    22484847
chr3:101376202(-) A-G intron -    22484847
chr3:101376274(-) A-G intron -    22484847
chr3:101377253(-) A-G intron -    22484847
chr3:101377440(-) A-G intron -    22484847
chr3:101379812(-) A-G intron -    22484847
chr3:101379873(-) A-G intron -    22484847
chr3:101379994(-) A-G intron -    22484847
chr3:101381055(-) A-G intron -    22484847
chr3:101381153(-) A-G intron -    22484847
chr3:101381722(-) A-G intron -    22484847
chr3:101381922(-) A-G intron -    22484847
chr3:101382003(-) A-G intron -    22484847
chr3:101382034(-) T-C intron -    22484847
chr3:101382055(-) A-G intron -    22484847
chr3:101382135(-) A-G intron -    22484847
chr3:101382142(-) A-G intron -    22484847
chr3:101382532(-) A-G intron -    22484847
chr3:101382606(-) A-G intron -    22484847
chr3:101382612(-) A-G intron -    22484847
chr3:101382703(-) A-G intron -    22484847
chr3:101385733(-) A-G intron -    22484847
chr3:101386102(-) A-G intron -    22484847
chr3:101387223(-) A-G intron -    22484847
chr3:101387232(-) A-G intron -    22484847
chr3:101387236(-) A-G intron -    22484847
chr3:101387341(-) A-G intron -    22484847
chr3:101387349(-) A-G intron -    22484847
chr3:101387351(-) A-G intron -    22484847
chr3:101388015(-) A-G intron -    22484847
chr3:101388810(-) A-G intron -    22484847
chr3:101388811(-) A-G intron -    22484847
chr3:101388837(-) A-G intron -    22484847
chr3:101388866(-) A-G intron -    22484847
chr3:101388873(-) A-G intron -    22484847
chr3:101392961(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZBTB11
chr3:101368185-101368186(-) m6A 3'UTR       27773535
chr3:101368282-101368283(-) m6A 3'UTR       27773535
chr3:101368323-101368324(-) m6A 3'UTR       27773535
chr3:101368429-101368430(-) m6A 3'UTR       27773535
chr3:101369201-101369202(-) m6A 3'UTR       24981863
chr3:101369870-101369871(-) m6A 3'UTR       27773535//22608085
chr3:101369954-101369955(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22608085
chr3:101369963-101369964(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22608085
chr3:101370050-101370051(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr3:101370084-101370085(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr3:101370197-101370198(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:101370218-101370219(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr3:101370225-101370226(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr3:101370249-101370250(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr3:101370296-101370297(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr3:101370322-101370323(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr3:101370355-101370356(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr3:101370378-101370379(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr3:101370389-101370390(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr3:101370452-101370453(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr3:101371350-101371351(-) m6A CDS       24284625//24981863//22608085
chr3:101371358-101371359(-) m6A CDS       24981863
chr3:101371419-101371420(-) m6A CDS       24981863
chr3:101378697-101378698(-) m6A CDS//exon       27773535
chr3:101378733-101378734(-) m6A CDS//exon       27773535
chr3:101378754-101378755(-) m6A CDS//exon       27773535
chr3:101378860-101378861(-) m6A CDS       27773535
chr3:101383411-101383412(-) m6A CDS       27773535
chr3:101383417-101383418(-) m6A CDS       27773535
chr3:101383493-101383494(-) m6A CDS       24981863//27773535//22575960
chr3:101383519-101383520(-) m6A CDS       24981863//27773535//22575960//22608085
chr3:101383950-101383951(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr3:101384014-101384015(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:101384024-101384025(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:101384110-101384111(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:101384150-101384151(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:101384157-101384158(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:101384164-101384165(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:101384169-101384170(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:101384177-101384178(-) m6A CDS       24284625//24981863//27773535//22608085
chr3:101384359-101384360(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr3:101384382-101384383(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr3:101384435-101384436(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr3:101384454-101384455(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr3:101390127-101390128(-) m6A 3'UTR//CDS       24284625//24981863//27371828//22608085
chr3:101390133-101390134(-) m6A 3'UTR//CDS       24284625//24981863//27371828//22608085
chr3:101390145-101390146(-) m6A 3'UTR//CDS       24284625//24981863//27371828//22608085
chr3:101390166-101390167(-) m6A 3'UTR//CDS       24284625//24981863//27371828//22608085
chr3:101390218-101390219(-) m6A 3'UTR//intron       24284625//24981863//27371828//22608085
chr3:101390830-101390831(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr3:101390836-101390837(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr3:101390917-101390918(-) Tm CDS       -
chr3:101390942-101390943(-) m6A CDS       24284625//27773535//27371828//22608085
chr3:101390947-101390948(-) m6A CDS       24284625//27773535//27371828//22608085
chr3:101391001-101391002(-) m6A CDS       27773535//27371828//22608085
chr3:101391025-101391026(-) m6A CDS       24209618//27773535//27371828
chr3:101395484-101395485(-) m6A CDS       24209618//27371828//27773536//22575960//22608085
chr3:101395540-101395541(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22575960//22608085
chr3:101395586-101395587(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22575960//22608085
chr3:101395622-101395623(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22575960//22608085
chr3:101395902-101395903(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr3:101396135-101396136(-) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr3:101396145-101396146(-) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr3:101396166-101396167(-) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr3:101396175-101396176(-) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr3:101396250-101396251(-) m6A 5'UTR       24981863//22608085
chr3:101396279-101396280(-) m6A 5'UTR       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548b-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
ZBTB11
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548b-5p
Interactor2: ZBTB11

Evidence Support:


Prediction-Evidence miRDB
Support Database ViRBase

References:


PMID 33201341 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.

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