Basic Information:

  VIRBase ID:  

HHID00107901

  Virus:  

SARS-CoV-2 (NC_045512.2)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548b-5p:  MIMAT0004798          SOX5:  NM_001330785     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548b-5p	SOX5
miRBase Accession/Entrez ID	MIMAT0004798	6660
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	L-SOX5//L-SOX5B//L-SOX5F//LAMSHF

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548b-5p	rs1180266201 chr6:119069102    A/G rs1338611711 chr6:119069100    C/T rs188182113 chr6:119069098    G/A rs188182113 chr6:119069098    G/C rs1158490090 chr6:119069118    T/C rs1414502200 chr6:119069112    T/A rs1472929879 chr6:119069115    C/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SOX5	chr12:24327136(-) A-I      intronic chr12:24327149(-) A-I      intronic chr12:24458730(-) A-I      intronic chr12:24458731(-) A-I      intronic chr12:24458749(-) A-I      intronic chr12:23981104(-) A-I      intronic chr12:23872575(-) A-I      intronic chr12:24458750(-) A-I      intronic chr12:23850617(-) A-I      intronic chr12:23850622(-) A-I      intronic chr12:23850623(-) A-I      intronic chr12:24265549(-) A-I      intronic chr12:24265553(-) A-I      intronic chr12:24265557(-) A-I      intronic chr12:24265562(-) A-I      intronic chr12:24265593(-) A-I      intronic chr12:24327128(-) A-I      intronic chr12:24258473(-) A-I      intronic chr12:24671037(-) A-I      intronic chr12:24603681(-) A-I      intronic chr12:24510611(-) A-I      intronic chr12:24510533(-) A-I      intronic chr12:24510526(-) A-I      intronic chr12:24506846(-) A-I      intronic chr12:24506845(-) A-I      intronic chr12:24506840(-) A-I      intronic chr12:24503992(-) A-I      intronic chr12:24154867(-) A-I      intronic chr12:24423272(-) A-I      intronic chr12:24423239(-) A-I      intronic chr12:24423133(-) A-I      intronic chr12:24172000(-) A-I      intronic chr12:24423132(-) A-I      intronic chr12:24423111(-) A-I      intronic chr12:24422865(-) A-I      intronic chr12:24422737(-) A-I      intronic chr12:24422733(-) A-I      intronic chr12:24391563(-) A-I      intronic chr12:24357529(-) A-I      intronic chr12:24349768(-) A-I      intronic chr12:24349581(-) A-I      intronic chr12:24348997(-) A-I      intronic chr12:24329181(-) A-I      intronic chr12:24327741(-) A-I      intronic chr12:24327691(-) A-I      intronic chr12:24327673(-) A-I      intronic chr12:24327643(-) A-I      intronic chr12:24327593(-) A-I      intronic chr12:24327573(-) A-I      intronic chr12:24327568(-) A-I      intronic chr12:24327553(-) A-I      intronic chr12:24327539(-) A-I      intronic chr12:24327135(-) A-I      intronic chr12:24327125(-) A-I      intronic chr12:24247005(-) A-I      intronic chr12:24327107(-) A-I      intronic chr12:24327034(-) A-I      intronic chr12:24326989(-) A-I      intronic chr12:24325434(-) A-I      intronic chr12:24325421(-) A-I      intronic chr12:24325416(-) A-I      intronic chr12:24325391(-) A-I      intronic chr12:24325349(-) A-I      intronic chr12:24324448(-) A-I      intronic chr12:24324286(-) A-I      intronic chr12:24324273(-) A-I      intronic chr12:24324247(-) A-I      intronic chr12:24324225(-) A-I      intronic chr12:24265683(-) A-I      intronic chr12:24148386(-) A-I      intronic chr12:24265603(-) A-I      intronic chr12:24246345(-) A-I      intronic chr12:24193698(-) A-I      intronic chr12:24265555(-) A-I      intronic chr12:24193695(-) A-I      intronic chr12:24193683(-) A-I      intronic chr12:24172198(-) A-I      intronic chr12:24263630(-) A-I      intronic chr12:24172179(-) A-I      intronic chr12:24256467(-) A-I      intronic chr12:24247100(-) A-I      intronic chr12:24154862(-) A-I      intronic chr12:24154520(-) A-I      intronic chr12:24327109(-) A-I      intronic chr12:24154251(-) A-I      intronic chr12:24154077(-) A-I      intronic chr12:24154071(-) A-I      intronic chr12:24146789(-) A-I      intronic chr12:24133030(-) A-I      intronic chr12:24132803(-) A-I      intronic chr12:24130515(-) A-I      intronic chr12:24130514(-) A-I      intronic chr12:24124168(-) A-I      intronic chr12:24124154(-) A-I      intronic chr12:24678897(-) A-I      intronic chr12:24043138(-) A-I      intronic chr12:23937985(-) A-I      intronic chr12:23937969(-) A-I      intronic chr12:23889690(-) A-I      intronic chr12:23889206(-) A-I      intronic chr12:23867456(-) A-I      intronic chr12:23867434(-) A-I      intronic chr12:23867424(-) A-I      intronic chr12:23867353(-) A-I      intronic chr12:23862266(-) A-I      intronic chr12:23862128(-) A-I      intronic chr12:23730888(-) A-I      intronic chr12:23710788(-) A-I      intronic chr12:23710772(-) A-I      intronic chr12:23710762(-) A-I      intronic chr12:24327110(-) A-I      intronic chr12:24126308(-) A-I      intronic chr12:24171485(-) A-I      intronic chr12:24327708(-) A-I      intronic chr12:24297676(-) A-I      intronic chr12:24628885(-) A-I      intronic chr12:24327069(-) A-I      intronic chr12:24297891(-) A-I      intronic chr12:24247085(-) A-I      intronic chr12:24263799(-) A-I      intronic chr12:24193617(-) A-I      intronic chr12:24132790(-) A-I      intronic chr12:24422891(-) A-I      intronic chr12:24523348(-) A-I      intronic chr12:24529801(-) A-I      intronic chr12:24327710(-) A-I      intronic chr12:24617353(-) A-I      intronic chr12:24423260(-) A-I      intronic chr12:24324760(-) A-I      intronic chr12:23850649(-) A-I      intronic chr12:24246266(-) A-I      intronic chr12:24256427(-) A-I      intronic chr12:24422710(-) A-I      intronic chr12:24348987(-) A-I      intronic chr12:24265548(-) A-I      intronic chr12:24503790(-) A-I      intronic chr12:24619173(-) A-I      intronic chr12:24258272(-) A-I      intronic chr12:24259712(-) A-I      intronic chr12:24256367(-) A-I      intronic chr12:24327108(-) A-I      intronic chr12:24348915(-) A-I      intronic chr12:23691981(-) A-I      intronic chr12:24263735(-) A-I      intronic chr12:24265712(-) A-I      intronic chr12:23692018(-) A-I      intronic chr12:24324322(-) A-I      intronic chr12:24126227(-) A-I      intronic chr12:24480417(-) A-I      intronic chr12:24132218(-) A-I      intronic chr12:24247084(-) A-I      intronic chr12:24423188(-) A-I      intronic chr12:24329044(-) A-I      intronic chr12:24423265(-) A-I      intronic chr12:24503779(-) A-I      intronic chr12:24124172(-) A-I      intronic chr12:24244406(-) A-I      intronic chr12:24327672(-) A-I      intronic chr12:24265749(-) A-I      intronic chr12:24297741(-) A-I      intronic chr12:23730973(-) A-I      intronic chr12:24198347(-) A-I      intronic chr12:23730400(-) A-I      intronic chr12:24679008(-) A-I      intronic chr12:24256522(-) A-I      intronic chr12:24529775(-) A-I      intronic chr12:24499652(-) A-I      intronic chr12:24126322(-) A-I      intronic chr12:24627993(-) A-I      intronic chr12:24327175(-) A-I      intronic chr12:23945474(-) A-I      intronic chr12:24132205(-) A-I      intronic chr12:24132774(-) A-I      intronic chr12:24324430(-) A-I      intronic chr12:24148516(-) A-I      intronic chr12:24348996(-) A-I      intronic chr12:24256391(-) A-I      intronic chr12:24297706(-) A-I      intronic chr12:24617378(-) A-I      intronic chr12:24132439(-) A-I      intronic chr12:24265580(-) A-I      intronic chr12:24324412(-) A-I      intronic chr12:23895796(-) A-I      intronic chr12:23991912(-) A-I      intronic chr12:24046125(-) A-I      intronic chr12:24348989(-) A-I      intronic chr12:24422711(-) A-I      intronic chr12:24026295(-) A-I      intronic chr12:24506671(-) A-I      intronic chr12:24349575(-) A-I      intronic chr12:24265530(-) A-I      intronic chr12:23730196(-) A-I      intronic chr12:24270867(-) A-I      intronic chr12:24126313(-) A-I      intronic chr12:24327633(-) A-I      intronic chr12:24489300(-) A-I      intronic chr12:24510614(-) A-I      intronic chr12:24683555(-) A-I      intronic chr12:24348992(-) A-I      intronic chr12:24324669(-) A-I      intronic chr12:24601033(-) A-I      intronic chr12:23850656(-) A-I      intronic chr12:23889698(-) A-I      intronic chr12:24133005(-) A-I      intronic chr12:24246943(-) A-I      intronic chr12:24246941(-) A-I      intronic chr12:24423092(-) A-I      intronic chr12:24297989(-) A-I      intronic chr12:23720542(-) A-I      intronic chr12:24246908(-) A-I      intronic chr12:24617324(-) A-I      intronic chr12:23896355(-) A-I      intronic chr12:24329141(-) A-I      intronic chr12:24329030(-) A-I      intronic chr12:24458719(-) A-I      intronic chr12:24132944(-) A-I      intronic chr12:24641280(-) A-I      intronic chr12:24265581(-) A-I      intronic chr12:24628008(-) A-I      intronic chr12:24349653(-) A-I      intronic chr12:24265589(-) A-I      intronic chr12:24423198(-) A-I      intronic chr12:24324269(-) A-I      intronic chr12:24146679(-) A-I      intronic chr12:24126233(-) A-I      intronic chr12:23730189(-) A-I      intronic chr12:24620750(-) A-I      intronic chr12:24154835(-) A-I      intronic chr12:24246966(-) A-I      intronic chr12:24619590(-) A-I      intronic chr12:24324429(-) A-I      intronic chr12:24246288(-) A-I      intronic chr12:24298569(-) A-I      intronic chr12:24270736(-) A-I      intronic chr12:24265579(-) A-I      intronic chr12:24329068(-) A-I      intronic chr12:24620755(-) A-I      intronic chr12:23850735(-) A-I      intronic chr12:24265613(-) A-I      intronic chr12:24329047(-) A-I      intronic chr12:24047216(-) A-I      intronic chr12:24130438(-) A-I      intronic chr12:24619530(-) A-I      intronic chr12:24246274(-) A-I      intronic chr12:24348995(-) A-I      intronic chr12:24489299(-) A-I      intronic chr12:24426081(-) A-I      intronic chr12:24154846(-) A-I      intronic chr12:24265747(-) A-I      intronic chr12:24348994(-) A-I      intronic chr12:24326994(-) A-I      intronic chr12:24325338(-) A-I      intronic chr12:24423093(-) A-I      intronic chr12:24148427(-) A-I      intronic chr12:24327191(-) A-I      intronic chr12:24126288(-) A-I      intronic chr12:24125910(-) A-I      intronic chr12:24256509(-) A-I      intronic chr12:24126533(-) A-I      intronic chr12:24324255(-) A-I      intronic chr12:24506605(-) A-I      intronic chr12:24327070(-) A-I      intronic chr12:24324296(-) A-I      intronic chr12:24418279(-) A-I      intronic chr12:24348988(-) A-I      intronic chr12:23846143(-) A-I      intronic chr12:23937970(-) A-I      intronic chr12:24126372(-) A-I      intronic chr12:24327576(-) A-I      intronic chr12:23937904(-) A-I      intronic chr12:24132927(-) A-I      intronic chr12:24480376(-) A-I      intronic chr12:24327655(-) A-I      intronic chr12:24327707(-) A-I      intronic chr12:24528637(-) A-I      intronic chr12:24126193(-) A-I      intronic chr12:24126468(-) A-I      intronic chr12:24125863(-) A-I      intronic chr12:24265517(-) A-I      intronic chr12:24126538(-) A-I      intronic chr12:24325378(-) A-I      intronic chr12:24267447(-) A-I      intronic chr12:24326992(-) A-I      intronic chr12:24628724(-) A-I      intronic chr12:23764200(-) A-I      intronic chr12:24669042(-) A-I      intronic chr12:24669023(-) A-I      intronic chr12:24247153(-) A-I      intronic chr12:24298014(-) A-I      intronic chr12:23889753(-) A-I      intronic chr12:24256489(-) A-I      intronic chr12:24603406(-) A-I      intronic chr12:24154859(-) A-I      intronic chr12:23846165(-) A-I      intronic chr12:24510608(-) A-I      intronic chr12:23890435(-) A-I      intronic chr12:23937399(-) A-I      intronic chr12:23720399(-) A-I      intronic chr12:24423274(-) A-I      intronic chr12:24327111(-) A-I      intronic chr12:24326961(-) A-I      intronic chr12:24132773(-) A-I      intronic chr12:24325299(-) A-I      intronic chr12:24265554(-) A-I      intronic chr12:24126290(-) A-I      intronic chr12:23730389(-) A-I      intronic chr12:23691739(-) A-I      intronic chr12:24327715(-) A-I      intronic chr12:24327188(-) A-I      intronic chr12:24349751(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SOX5	chr12:24125863(-) A-I intron -    15342557 chr12:24125910(-) A-I intron -    15342557 chr12:24126193(-) A-I intron -    15342557 chr12:24126227(-) A-I intron -    15342557 chr12:24126233(-) A-I intron -    15342557 chr12:24126288(-) A-I intron -    15342557 chr12:24126372(-) A-I intron -    15342557 chr12:24126468(-) A-I intron -    15342557 chr12:24126533(-) A-I intron -    15342557 chr12:24126538(-) A-I intron -    15342557 chr12:24246943(-) A-G intron -    22484847 chr12:24256489(-) A-G intron -    22484847 chr12:24265579(-) A-G intron -    22484847 chr12:24265581(-) A-G intron -    22484847 chr12:24265589(-) A-G intron -    22484847 chr12:23846165(-) A-G intron -    22484847 chr12:23867496(-) C-T intron -    22484847 chr12:23937399(-) A-G intron -    22484847 chr12:23937970(-) A-G intron -    22484847 chr12:23991938(-) A-T intron -    22484847 chr12:23991973(-) C-G intron -    22484847 chr12:24148516(-) A-G intron -    22484847 chr12:24154835(-) A-G intron -    22484847 chr12:24154846(-) A-G intron -    22484847 chr12:24154859(-) A-G intron -    22484847 chr12:24193617(-) A-G intron -    22484847 chr12:24246266(-) A-G intron -    22484847 chr12:24246274(-) A-G intron -    22484847 chr12:24246966(-) A-G intron -    22484847 chr12:24256427(-) A-G intron -    22484847 chr12:24256509(-) A-G intron -    22484847 chr12:24256522(-) A-G intron -    22484847 chr12:24258272(-) A-G intron -    22484847 chr12:24263735(-) A-G intron -    22484847 chr12:24263799(-) A-G intron -    22484847 chr12:24265749(-) A-G intron -    22484847 chr12:24297676(-) A-G intron -    22484847 chr12:24324760(-) A-G intron -    22484847 chr12:24325378(-) A-G intron -    22484847 chr12:24327175(-) A-G intron -    22484847 chr12:24327188(-) A-G intron -    22484847 chr12:24327191(-) A-G intron -    22484847 chr12:24327576(-) A-G intron -    22484847 chr12:24327633(-) A-G intron -    22484847 chr12:24327655(-) A-G intron -    22484847 chr12:24327672(-) A-G intron -    22484847 chr12:24327707(-) A-G intron -    22484847 chr12:24327708(-) A-G intron -    22484847 chr12:24327710(-) A-G intron -    22484847 chr12:24327715(-) A-G intron -    22484847 chr12:24329141(-) A-G intron -    22484847 chr12:24348915(-) A-G intron -    22484847 chr12:24348987(-) A-G intron -    22484847 chr12:24348988(-) A-G intron -    22484847 chr12:24348989(-) A-G intron -    22484847 chr12:24348992(-) A-G intron -    22484847 chr12:24348994(-) A-G intron -    22484847 chr12:24348995(-) A-G intron -    22484847 chr12:24348996(-) A-G intron -    22484847 chr12:24349575(-) A-G intron -    22484847 chr12:24349653(-) A-G intron -    22484847 chr12:24349751(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOX5	chr12:23682592-23682593(-) m6A 3'UTR       27773535 chr12:23686836-23686837(-) m6A 3'UTR       27773535 chr12:23686954-23686955(-) m6A 3'UTR       24981863//27773535//22608085 chr12:23686971-23686972(-) m6A 3'UTR       24981863//27773535//22608085 chr12:23687002-23687003(-) m6A 3'UTR       24981863//27773535//22608085 chr12:23687020-23687021(-) m6A 3'UTR       24981863//27773535//22608085 chr12:23687121-23687122(-) m6A 3'UTR       24209618//24981863//27773535//22608085 chr12:23687164-23687165(-) m6A CDS       24209618//24981863//27773535//22608085 chr12:23687177-23687178(-) m6A CDS       24209618//24981863//27773535//22608085 chr12:23687255-23687256(-) m6A CDS       24209618//24981863//27773535//22608085 chr12:23689568-23689569(-) m6A 3'UTR//CDS       27773535 chr12:23689578-23689579(-) m6A 3'UTR//CDS       27773535 chr12:23728729-23728730(-) m6A CDS//exon//intron       27773535 chr12:23728736-23728737(-) m6A CDS//exon//intron       27773535 chr12:23728749-23728750(-) m6A CDS//exon//intron       27773535 chr12:23737517-23737518(-) m6A 5'UTR//intron       27773535 chr12:23737543-23737544(-) m6A 5'UTR//intron       27773535 chr12:23757342-23757343(-) m6A CDS//exon       27773535 chr12:23757354-23757355(-) m6A CDS//exon       27773535 chr12:23887677-23887678(-) m6A CDS//exon       27773535 chr12:24072978-24072979(-) m6A exon//intron       - chr12:24073028-24073029(-) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548b-5p	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	SOX5	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548b-5p
Interactor2: SOX5

Evidence Support:

Prediction-Evidence	miRDB
Support Database	ViRBase

References:

PMID	33201341	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	None	Interactor2 expression	None
Description	By custom target prediction, a panel of miRNA sequences able to recognize the SARS-CoV-2 sequence was collected. Only targets with a very high score (95-100) were retained for further analyses.