Detail Information

Basic Information:


  VIRBase ID:  

HHID00105304

  Virus:  

SARS-CoV-2

  Host:  

Homo sapiens

  Confidence Score:  

0.9612

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-223-5p:           CAPN2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-223-5p CAPN2
miRBase
Accession/Entrez ID
MIMAT0004570 824
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CANP2//CANPL2//CANPml//mCANP

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-223-5p
rs1240009384 chrX:66018913    A/T
rs1397275461 chrX:66018904    G/T
rs1464475149 chrX:66018916    T/C
rs761701581 chrX:66018906    C/G
rs772305537 chrX:66018909    G/A
rs774279244 chrX:66018895    C/T
rs890919635 chrX:66018896    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CAPN2
chr1:223950652(+) A-I      intronic
chr1:223960904(+) A-I      intronic
chr1:223950664(+) A-I      intronic
chr1:223933217(+) A-I      intronic
chr1:223950637(+) A-I      intronic
chr1:223950626(+) A-I      intronic
chr1:223910761(+) A-I      intronic
chr1:223910901(+) A-I      intronic
chr1:223956865(+) A-I      intronic
chr1:223956962(+) A-I      intronic
chr1:223954452(+) A-I      intronic
chr1:223910922(+) A-I      intronic
chr1:223957006(+) A-I      intronic
chr1:223957032(+) A-I      intronic
chr1:223957097(+) A-I      intronic
chr1:223950628(+) A-I      intronic
chr1:223923754(+) A-I      intronic
chr1:223907162(+) A-I      intronic
chr1:223907147(+) A-I      intronic
chr1:223923582(+) A-I      intronic
chr1:223954555(+) A-I      intronic
chr1:223910844(+) A-I      intronic
chr1:223910810(+) A-I      intronic
chr1:223907094(+) A-I      intronic
chr1:223910213(+) A-I      intronic
chr1:223923682(+) A-I      intronic
chr1:223922958(+) A-I      intronic
chr1:223907062(+) A-I      intronic
chr1:223910139(+) A-I      intronic
chr1:223923691(+) A-I      intronic
chr1:223924473(+) A-I      intronic
chr1:223933258(+) A-I      intronic
chr1:223929963(+) A-I      intronic
chr1:223910936(+) A-I      intronic
chr1:223907120(+) A-I      intronic
chr1:223910841(+) A-I      intronic
chr1:223923551(+) A-I      intronic
chr1:223954541(+) A-I      intronic
chr1:223957003(+) A-I      intronic
chr1:223910885(+) A-I      intronic
chr1:223930485(+) A-I      intronic
chr1:223912416(+) A-I      intronic
chr1:223907121(+) A-I      intronic
chr1:223907126(+) A-I      intronic
chr1:223954542(+) A-I      intronic
chr1:223912446(+) A-I      intronic
chr1:223952250(+) A-I      intronic
chr1:223923559(+) A-I      intronic
chr1:223923065(+) A-I      intronic
chr1:223923070(+) A-I      intronic
chr1:223922980(+) A-I      intronic
chr1:223923110(+) A-I      intronic
chr1:223923119(+) A-I      intronic
chr1:223923059(+) A-I      intronic
chr1:223923562(+) A-I      intronic
chr1:223912554(+) A-I      intronic
chr1:223923077(+) A-I      intronic
chr1:223923561(+) A-I      intronic
chr1:223956949(+) A-I      intronic
chr1:223954409(+) A-I      intronic
chr1:223923044(+) A-I      intronic
chr1:223923029(+) A-I      intronic
chr1:223950799(+) A-I      intronic
chr1:223961439(+) A-I      intronic
chr1:223957168(+) A-I      intronic
chr1:223908097(+) A-I      intronic
chr1:223961103(+) A-I      intronic
chr1:223954404(+) A-I      intronic
chr1:223910013(+) A-I      intronic
chr1:223923621(+) A-I      intronic
chr1:223926141(+) A-I      intronic
chr1:223929786(+) A-I      intronic
chr1:223910931(+) A-I      intronic
chr1:223908130(+) A-I      intronic
chr1:223897313(+) A-I      intronic
chr1:223956952(+) A-I      intronic
chr1:223956956(+) A-I      intronic
chr1:223954403(+) A-I      intronic
chr1:223933218(+) A-I      intronic
chr1:223951567(+) A-I      intronic
chr1:223910190(+) A-I      intronic
chr1:223912683(+) A-I      intronic
chr1:223910064(+) A-I      intronic
chr1:223912490(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CAPN2
chr1:223922980(+) A-I intron -    22028664
chr1:223923059(+) A-I intron -    22028664
chr1:223923065(+) A-I intron -    22028664
chr1:223923070(+) A-I intron -    22028664
chr1:223923077(+) A-I intron -    22028664
chr1:223923110(+) A-I intron -    22028664
chr1:223923119(+) A-I intron -    22028664
chr1:223923123(+) A-I intron -    22028664
chr1:223954404(+) A-I intron -    21960545
chr1:223910761(+) A-I intron -    21960545
chr1:223930413(+) A-I intron -    21960545
chr1:223962879(+) G-A intron -    21725310
chr1:223908097(+) A-G intron -    22484847
chr1:223908130(+) A-G intron -    22484847
chr1:223912554(+) A-G intron -    22484847
chr1:223923559(+) A-G intron -    22484847
chr1:223923561(+) A-G intron -    22484847
chr1:223923562(+) A-G intron -    22484847
chr1:223923621(+) A-G intron -    22484847
chr1:223954403(+) A-G intron -    22484847
chr1:223954404(+) A-G intron -    22484847
chr1:223956956(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CAPN2
chr1:223889300-223889301(+) m6A 5'UTR       24981863
chr1:223889339-223889340(+) m6A 5'UTR       24981863
chr1:223889387-223889388(+) m6A 5'UTR       24981863
chr1:223900334-223900335(+) m6A 5'UTR//intron       24284625//24981863//22575960
chr1:223900373-223900374(+) m6A CDS//intron       24284625//26404942//22575960
chr1:223900433-223900434(+) m6A CDS//intron       24284625//26404942//22575960
chr1:223900484-223900485(+) m6A CDS//intron       24284625//22575960
chr1:223900549-223900550(+) m6A CDS//intron       24284625//22575960
chr1:223905512-223905513(+) m6A CDS       24284625//22575960
chr1:223931876-223931877(+) m6A CDS       26404942//22575960
chr1:223931894-223931895(+) m6A CDS       26404942//22575960
chr1:223934754-223934755(+) m6A CDS       26404942
chr1:223936756-223936757(+) m6A CDS//exon       26404942//22575960
chr1:223937129-223937130(+) m6A exon//intron       22575960
chr1:223938617-223938618(+) m6A CDS       24981863//22575960
chr1:223938657-223938658(+) m6A CDS       24981863//26404942//22575960
chr1:223939712-223939713(+) m6A CDS       24981863//26404942//22575960
chr1:223939721-223939722(+) m6A CDS//exon       24981863//26404942//22575960
chr1:223940559-223940560(+) m6A CDS//exon       24981863//26404942//22575960
chr1:223940593-223940594(+) m6A CDS//exon       24981863//26404942//22575960
chr1:223940613-223940614(+) m6A CDS//exon       24284625//24981863//26404942//22575960
chr1:223940649-223940650(+) m6A CDS//exon       24284625//24981863//26404942//22575960
chr1:223943196-223943197(+) m6A CDS//exon       24284625//25456834//24981863//26404942//22575960
chr1:223943319-223943320(+) m6A CDS//exon       24284625//25456834//24981863//26404942//22575960
chr1:223945138-223945139(+) m6A exon//intron       24284625
chr1:223945366-223945367(+) m6A exon//intron       25456834//24981863
chr1:223945412-223945413(+) m6A exon//intron       25456834//24981863
chr1:223945433-223945434(+) m6A exon//intron       25456834//24981863
chr1:223945442-223945443(+) m6A exon//intron       25456834//24981863
chr1:223945455-223945456(+) m6A exon//intron       25456834//24981863
chr1:223945477-223945478(+) m6A exon//intron       25456834//24981863
chr1:223945483-223945484(+) m6A exon//intron       25456834//24981863
chr1:223945511-223945512(+) m6A exon//intron       25456834//24981863
chr1:223946983-223946984(+) m6A CDS//exon       26404942
chr1:223947005-223947006(+) m6A CDS//exon       26404942
chr1:223947041-223947042(+) m6A CDS//exon       26404942
chr1:223947123-223947124(+) m6A CDS//exon       22575960
chr1:223949928-223949929(+) m6A CDS//exon       -
chr1:223951881-223951882(+) m6A CDS//exon       22575960
chr1:223954103-223954104(+) m6A CDS//exon       22575960
chr1:223957909-223957910(+) m6A exon//intron       24284625//24981863
chr1:223957915-223957916(+) m6A exon//intron       24284625//24981863
chr1:223957921-223957922(+) m6A exon//intron       24284625//24981863
chr1:223957964-223957965(+) m6A exon//intron       24981863
chr1:223957976-223957977(+) m6A exon//intron       24981863
chr1:223958012-223958013(+) m6A exon//intron       24981863
chr1:223958199-223958200(+) Gm CDS//exon       -
chr1:223958872-223958873(+) m6A exon//intron       -
chr1:223960896-223960897(+) m6A exon//intron       24284625
chr1:223962582-223962583(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085
chr1:223962610-223962611(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085
chr1:223962644-223962645(+) m6A 3'UTR//exon       24284625//24981863//22608085
chr1:223962661-223962662(+) m6A 3'UTR//exon       24284625//24981863//22608085
chr1:223962918-223962919(+) m6A 3'UTR//exon       26404942
chr1:223962939-223962940(+) m6A 3'UTR//exon       26404942
chr1:223963008-223963009(+) m6A 3'UTR//exon       26404942
chr1:223963050-223963051(+) m6A 3'UTR//exon       26404942
chr1:223963106-223963107(+) m6A 3'UTR//exon       26404942
chr1:223963130-223963131(+) m6A 3'UTR//exon       26404942
chr1:223963137-223963138(+) m6A 3'UTR//exon       26404942
chr1:223963233-223963234(+) m6A 3'UTR//exon       24284625//26404942//27773535
chr1:223963263-223963264(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr1:223963277-223963278(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr1:223963297-223963298(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr1:223963314-223963315(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr1:223963341-223963342(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr1:223963350-223963351(+) m6A 3'UTR//exon       24284625//24981863//26404942//27773535
chr1:223963390-223963391(+) m6A 3'UTR//exon       24981863//27773535
chr1:223963418-223963419(+) m6A 3'UTR//exon       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-223-5p
Exosome Primary dendritic cells     21505438
Exosome Breast milk     22211110
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CAPN2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-223-5p
Interactor2: CAPN2

Evidence Support:


Strong-Evidence Luciferase assay//qPCR//Western blot
Prediction-Evidence miRWalk
Support Database ViRBase

References:


PMID 33675361 Target region 3'UTR
Source ViRBase Interactor1 expression Upregulation
Tissue or cell line None Interactor2 expression Downregulation
Description In the current study, available miRNAs that regulate drug targets for treating COVID-19 in clinical trials are summarized in Table 2. miRNAs regulate the clinical targets of SARS-CoV-2 in TTD.

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