Detail Information

Basic Information:


  VIRBase ID:  

HHID00105153

  Virus:  

SARS-CoV-2

  Host:  

Homo sapiens

  Confidence Score:  

0.9612

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-124-3p:           CAPN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-124-3p CAPN1
miRBase
Accession/Entrez ID
MIMAT0000422 823
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CANP//CANP1//CANPL1//muCANP//muCL//SPG76

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-124-3p
rs1256263272 chr8:9903400    T/C
rs1482188536 chr8:9903410    C/A
rs753437646 chr8:9903401    G/T
rs759045572 chr8:9903402    G/T
rs764861083 chr8:9903408    A/G
rs759034202 chr8:64379220    G/A
rs1364752547 chr20:63178563    G/A
rs749909250 chr20:63178569    G/A
rs1287398108 chr20:63178559    C/G
rs34059726 chr20:63178555    G/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CAPN1
chr11:64959543(+) A-I      intronic
chr11:64959552(+) A-I      intronic
chr11:64959553(+) A-I      intronic
chr11:64965205(+) A-I      intronic
chr11:64965219(+) A-I      intronic
chr11:64959579(+) A-I      intronic
chr11:64956553(+) A-I      intronic
chr11:64965206(+) A-I      intronic
chr11:64965681(+) A-I      intronic
chr11:64959523(+) A-I      intronic
chr11:64959527(+) A-I      intronic
chr11:64967726(+) A-I      intronic
chr11:64959542(+) A-I      intronic
chr11:64967916(+) A-I      intronic
chr11:64962751(+) A-I      intronic
chr11:64959033(+) A-I      intronic
chr11:64967919(+) A-I      intronic
chr11:64965172(+) A-I      intronic
chr11:64967981(+) A-I      intronic
chr11:64969935(+) A-I      intronic
chr11:64961272(+) A-I      intronic
chr11:64955243(+) A-I      intronic
chr11:64960278(+) A-I      intronic
chr11:64970017(+) A-I      intronic
chr11:64965228(+) A-I      intronic
chr11:64960908(+) A-I      intronic
chr11:64970018(+) A-I      intronic
chr11:64965238(+) A-I      intronic
chr11:64965244(+) A-I      intronic
chr11:64970761(+) A-I      intronic
chr11:64965265(+) A-I      intronic
chr11:64965202(+) A-I      intronic
chr11:64961513(+) A-I      intronic
chr11:64960928(+) A-I      intronic
chr11:64959611(+) A-I      intronic
chr11:64965846(+) A-I      intronic
chr11:64965193(+) A-I      intronic
chr11:64959559(+) A-I      intronic
chr11:64958301(+) A-I      intronic
chr11:64959626(+) A-I      intronic
chr11:64960939(+) A-I      intronic
chr11:64965251(+) A-I      intronic
chr11:64974770(+) A-I      intronic
chr11:64961337(+) A-I      intronic
chr11:64961326(+) A-I      intronic
chr11:64962680(+) A-I      intronic
chr11:64965280(+) A-I      intronic
chr11:64960985(+) A-I      intronic
chr11:64965162(+) A-I      intronic
chr11:64965304(+) A-I      intronic
chr11:64960979(+) A-I      intronic
chr11:64967600(+) A-I      intronic
chr11:64965274(+) A-I      intronic
chr11:64959547(+) A-I      intronic
chr11:64967633(+) A-I      intronic
chr11:64967660(+) A-I      intronic
chr11:64956624(+) A-I      intronic
chr11:64958929(+) A-I      intronic
chr11:64958919(+) A-I      intronic
chr11:64967780(+) A-I      intronic
chr11:64965086(+) A-I      intronic
chr11:64958381(+) A-I      intronic
chr11:64968181(+) A-I      intronic
chr11:64962650(+) A-I      intronic
chr11:64958367(+) A-I      intronic
chr11:64965279(+) A-I      intronic
chr11:64956621(+) A-I      intronic
chr11:64975226(+) A-I      intronic
chr11:64956594(+) A-I      intronic
chr11:64961622(+) A-I      intronic
chr11:64961563(+) A-I      intronic
chr11:64958930(+) A-I      intronic
chr11:64962617(+) A-I      intronic
chr11:64961569(+) A-I      intronic
chr11:64961533(+) A-I      intronic
chr11:64961668(+) A-I      intronic
chr11:64959567(+) A-I      intronic
chr11:64965102(+) A-I      intronic
chr11:64962752(+) A-I      intronic
chr11:64960929(+) A-I      intronic
chr11:64961282(+) A-I      intronic
chr11:64968545(+) A-I      intronic
chr11:64959591(+) A-I      intronic
chr11:64965309(+) A-I      intronic
chr11:64961619(+) A-I      intronic
chr11:64961537(+) A-I      intronic
chr11:64965724(+) A-I      intronic
chr11:64974788(+) A-I      intronic
chr11:64959577(+) A-I      intronic
chr11:64975305(+) A-I      intronic
chr11:64961204(+) A-I      intronic
chr11:64956595(+) A-I      intronic
chr11:64965171(+) A-I      intronic
chr11:64961048(+) A-I      intronic
chr11:64974745(+) A-I      intronic
chr11:64965198(+) A-I      intronic
chr11:64959585(+) A-I      intronic
chr11:64975264(+) A-I      intronic
chr11:64967590(+) A-I      intronic
chr11:64965801(+) A-I      intronic
chr11:64961469(+) A-I      intronic
chr11:64965211(+) A-I      intronic
chr11:64959540(+) A-I      intronic
chr11:64960969(+) A-I      intronic
chr11:64959651(+) A-I      intronic
chr11:64965891(+) A-I      intronic
chr11:64969433(+) A-I      intronic
chr11:64961578(+) A-I      intronic
chr11:64965823(+) A-I      intronic
chr11:64966264(+) A-I      intronic
chr11:64958927(+) A-I      intronic
chr11:64965885(+) A-I      intronic
chr11:64961519(+) A-I      intronic
chr11:64965151(+) A-I      intronic
chr11:64966486(+) A-I      intronic
chr11:64961559(+) A-I      intronic
chr11:64961327(+) A-I      intronic
chr11:64959599(+) A-I      intronic
chr11:64960933(+) A-I      intronic
chr11:64958364(+) A-I      intronic
chr11:64967650(+) A-I      intronic
chr11:64961001(+) A-I      intronic
chr11:64958349(+) A-I      intronic
chr11:64974735(+) A-I      intronic
chr11:64962760(+) A-I      intronic
chr11:64965781(+) A-I      intronic
chr11:64958313(+) A-I      intronic
chr11:64965257(+) A-I      intronic
chr11:64974851(+) A-I      intronic
chr11:64959645(+) A-I      intronic
chr11:64961562(+) A-I      intronic
chr11:64958323(+) A-I      intronic
chr11:64959575(+) A-I      intronic
chr11:64958924(+) A-I      intronic
chr11:64965239(+) A-I      intronic
chr11:64967944(+) A-I      intronic
chr11:64961639(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CAPN1
chr11:64959575(+) A-G intron -    22484847
chr11:64959577(+) A-G intron -    22484847
chr11:64959591(+) A-G intron -    22484847
chr11:64961469(+) A-G intron -    22484847
chr11:64961563(+) A-G intron -    22484847
chr11:64962751(+) A-G intron -    22484847
chr11:64962760(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CAPN1
chr11:64948689-64948690(+) m6A 5'UTR//intron       27773536
chr11:64949177-64949178(+) m6A 5'UTR//intron       24981863
chr11:64949248-64949249(+) m6A 5'UTR//intron       24981863
chr11:64949274-64949275(+) m6A 5'UTR//exon//intron       24284625//25456834//24981863
chr11:64949452-64949453(+) m6A 5'UTR//exon//intron       25456834//24981863
chr11:64949469-64949470(+) m6A 5'UTR//exon//intron       25456834//24981863
chr11:64949970-64949971(+) m6A 5'UTR//intron       25456834
chr11:64950022-64950023(+) m6A 5'UTR//intron       25456834
chr11:64950058-64950059(+) m6A 5'UTR//intron       25456834
chr11:64950362-64950363(+) Y CDS//exon//intron       26075521
chr11:64955429-64955430(+) m6A 3'UTR//CDS//exon       24209618
chr11:64955468-64955469(+) m6A 3'UTR//CDS//exon       24209618
chr11:64955718-64955719(+) m6A exon//intron       24209618
chr11:64955733-64955734(+) m6A exon//intron       24209618
chr11:64955752-64955753(+) m6A exon//intron       24209618
chr11:64955801-64955802(+) m6A exon//intron       24209618
chr11:64955815-64955816(+) m6A exon//intron       24209618
chr11:64955828-64955829(+) m6A exon//intron       -
chr11:64955898-64955899(+) m6A CDS//exon       -
chr11:64955907-64955908(+) m6A CDS//exon       -
chr11:64955922-64955923(+) m6A CDS//exon       -
chr11:64956070-64956071(+) m6A CDS//exon       -
chr11:64956135-64956136(+) m6A CDS//exon       -
chr11:64956151-64956152(+) m6A CDS//exon       -
chr11:64956208-64956209(+) m6A CDS//exon       -
chr11:64970851-64970852(+) m6A exon//intron       -
chr11:64972168-64972169(+) m6A CDS//exon       -
chr11:64972222-64972223(+) m6A CDS//exon       -
chr11:64973952-64973953(+) Y CDS//exon       26075521
chr11:64975556-64975557(+) m6A CDS//exon       -
chr11:64975705-64975706(+) m6A CDS//exon       -
chr11:64978764-64978765(+) m6A 3'UTR//exon       24284625//24209618//24981863
chr11:64978934-64978935(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr11:64978976-64978977(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr11:64979038-64979039(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr11:64979130-64979131(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085
chr11:64979137-64979138(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085
chr11:64979356-64979357(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr11:64979367-64979368(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr11:64979441-64979442(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-124-3p
Exosome Plasma     23663360
Exosome Blood     -
Microvesicle Cerebrospinal fluid     24797360
Microvesicle Blood|Fibroblasts|Urine     -
Mitochondrion Cell line (HEK-293)     22984580
CAPN1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID
Function Link  
RNAInter hsa-miR-124-3p
N,N-Dimethyltryptamine 6089 Drug interaction    RC00002595
Estradiol 5757 Drug interaction    RC00002594
Vorinostat 5311 Drug interaction    RC00002593
Cocaine 446220 Drug interaction    RC00002602
Paroxetine 43815 Drug interaction    RC00002601
Methylphenidate 4158 Drug interaction    RC00002592
Methadone 4095 Drug interaction    RC00002591
Etoposide 36462 Drug interaction    RC00002600
Harmaline 3564 Drug interaction    RC00002603
Fluoxetine 3386 Drug interaction    RC00002590
Enoxacin 3229 Drug interaction    RC00002589
Doxorubicin 31703 Drug interaction    RC00002599
Desipramine 2995 Drug interaction    RC00002588
Camptothecin 24360 Drug interaction    RC00002598
Cobalt chloride (CoCl2) 24288 Drug interaction    RC00002597
N,N-Dimethyl-5-methoxytryptamine 1832 Drug interaction    RC00002587
Arsenic trioxide 14888 Drug interaction    RC00002596
IR - Drug interaction    RC00002604
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-124-3p

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-124-3p
Interactor2: CAPN1

Evidence Support:


Strong-Evidence Dual luciferase reporter assay//RT-qPCR//Western blot
Prediction-Evidence Targetscan
Support Database ViRBase

References:


PMID 33675361 Target region 3'UTR
Source ViRBase Interactor1 expression Upregulation
Tissue or cell line HCN-2 cells Interactor2 expression Downregulation
Description In the current study, available miRNAs that regulate drug targets for treating COVID-19 in clinical trials are summarized in Table 2. miRNAs regulate the clinical targets of SARS-CoV-2 in TTD.

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