Detail Information

Basic Information:


  VIRBase ID:  

HHID00103108

  Virus:  

Porcine deltacoronavirus

  Host:  

Sus scrofa

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_000227 CEP57L1
miRBase
Accession/Entrez ID		 LNC_000227 100739336
Organism Sus scrofa Sus scrofa
Category lncRNA mRNA
Alias - -

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CEP57L1
chr1:84559035-84559036(+) m6A CDS       28267806
chr1:84559054-84559055(+) m6A 3'UTR       28267806
chr1:84559071-84559072(+) m6A 3'UTR       28267806
chr1:84559092-84559093(+) m6A 3'UTR       28267806

Interaction Network (The top 100 interactions):


Interactor1: LNC_000227
Interactor2: CEP57L1

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32063887 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Table S3. LncRNA-protein-coding genes pairs for whole transcriptome-wide co-located taget genes prediction.

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