Detail Information

Basic Information:


  VIRBase ID:  

HHID00103098

  Virus:  

Porcine deltacoronavirus

  Host:  

Sus scrofa

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_000221 SHPRH
miRBase
Accession/Entrez ID		 LNC_000221 100154314
Organism Sus scrofa Sus scrofa
Category lncRNA mRNA
Alias - -

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SHPRH
chr1:21856744-21856745(+) m6A 5'UTR       28267806
chr1:21856756-21856757(+) m6A 5'UTR       28267806
chr1:21865229-21865230(+) m6A 5'UTR       28267806
chr1:21865611-21865612(+) m6A CDS       28267806
chr1:21865709-21865710(+) m6A CDS       28267806
chr1:21865719-21865720(+) m6A CDS       28267806
chr1:21865731-21865732(+) m6A CDS       28267806
chr1:21865839-21865840(+) m6A CDS       28267806
chr1:21867346-21867347(+) m6A CDS       28267806
chr1:21878824-21878825(+) m6A CDS       28267806
chr1:21878927-21878928(+) m6A CDS       28267806
chr1:21878941-21878942(+) m6A CDS       28267806

Interaction Network (The top 100 interactions):


Interactor1: LNC_000221
Interactor2: SHPRH

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32063887 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Table S3. LncRNA-protein-coding genes pairs for whole transcriptome-wide co-located taget genes prediction.

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