Detail Information

Basic Information:


  VIRBase ID:  

HHID00099732

  Virus:  

Porcine deltacoronavirus

  Host:  

Sus scrofa

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ALDBSSCT0000000679 BCLAF1
miRBase
Accession/Entrez ID		 ALDBSSCT0000000679 100462726
Organism Sus scrofa Sus scrofa
Category lncRNA mRNA
Alias - -

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BCLAF1
chr1:31493396-31493397(-) m6A 3'UTR       28267806
chr1:31493401-31493402(-) m6A 3'UTR       28267806
chr1:31493860-31493861(-) m6A CDS       28267806
chr1:31493888-31493889(-) m6A CDS       28267806
chr1:31493936-31493937(-) m6A CDS       28267806
chr1:31509861-31509862(-) m6A CDS       28267806
chr1:31509871-31509872(-) m6A CDS       28267806
chr1:31510024-31510025(-) m6A CDS       28267806
chr1:31510038-31510039(-) m6A CDS       28267806
chr1:31510078-31510079(-) m6A CDS       28267806

Interaction Network (The top 100 interactions):


Interactor1: ALDBSSCT0000000679
Interactor2: BCLAF1

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32063887 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Table S3. LncRNA-protein-coding genes pairs for whole transcriptome-wide co-located taget genes prediction.

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