Detail Information

Basic Information:


  VIRBase ID:  

HHID00099730

  Virus:  

Porcine deltacoronavirus

  Host:  

Sus scrofa

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ALDBSSCT0000000679 PDE7B
miRBase
Accession/Entrez ID		 ALDBSSCT0000000679 100037969
Organism Sus scrofa Sus scrofa
Category lncRNA mRNA
Alias - -

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PDE7B
chr1:31432645-31432646(+) m6A CDS       28267806
chr1:31432662-31432663(+) m6A CDS       28267806
chr1:31432680-31432681(+) m6A CDS       28267806
chr1:31432807-31432808(+) m6A 3'UTR       28267806
chr1:31432848-31432849(+) m6A 3'UTR       28267806
chr1:31433000-31433001(+) m6A 3'UTR       28267806
chr1:31433109-31433110(+) m6A 3'UTR       28267806
chr1:31433131-31433132(+) m6A 3'UTR       28267806
chr1:31433148-31433149(+) m6A 3'UTR       28267806
chr1:31433279-31433280(+) m6A 3'UTR       28267806
chr1:31433300-31433301(+) m6A 3'UTR       28267806
chr1:31433324-31433325(+) m6A 3'UTR       28267806
chr1:31433330-31433331(+) m6A 3'UTR       28267806
chr1:31433356-31433357(+) m6A 3'UTR       28267806
chr1:31433405-31433406(+) m6A 3'UTR       28267806
chr1:31433601-31433602(+) m6A 3'UTR       28267806
chr1:31433615-31433616(+) m6A 3'UTR       28267806
chr1:31433714-31433715(+) m6A 3'UTR       28267806
chr1:31433770-31433771(+) m6A 3'UTR       28267806
chr1:31433816-31433817(+) m6A 3'UTR       28267806
chr1:31433822-31433823(+) m6A 3'UTR       28267806
chr1:31433855-31433856(+) m6A 3'UTR       28267806
chr1:31433878-31433879(+) m6A 3'UTR       28267806
chr1:31433928-31433929(+) m6A 3'UTR       28267806

Interaction Network (The top 100 interactions):


Interactor1: ALDBSSCT0000000679
Interactor2: PDE7B

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32063887 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description Table S3. LncRNA-protein-coding genes pairs for whole transcriptome-wide co-located taget genes prediction.

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