Detail Information

Basic Information:


  VIRBase ID:  

HHID00099599

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-6836-5p:           SNX33:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-6836-5p SNX33
miRBase
Accession/Entrez ID		 MIMAT0027574 257364
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - SH3PX3//SH3PXD3C//SNX30

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-6836-5p
rs1175923434 chr7:2257551    A/T
rs1397797431 chr7:2257557    G/T
rs1402374487 chr7:2257560    C/T
rs373301992 chr7:2257555    C/T
rs751019973 chr7:2257572    G/A
rs751019973 chr7:2257572    G/T
rs752401585 chr7:2257559    G/A
rs752401585 chr7:2257559    G/C
rs762697510 chr7:2257562    A/T
rs765066033 chr7:2257558    C/A
rs765066033 chr7:2257558    C/T
rs767238780 chr7:2257563    G/A
rs767238780 chr7:2257563    G/T
rs776617786 chr7:2257553    G/A
rs776617786 chr7:2257553    G/T
rs1378787511 chr7:2257565    G/A
rs747250755 chr7:2257571    C/CT
rs756757197 chr7:2257570    G/A
rs768462924 chr7:2257568    C/G
rs780841384 chr7:2257571    C/A

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNX33
chr15:75940381-75940382(+) m6A 5'UTR       24284625//24209618//25456834//24981863
chr15:75940427-75940428(+) m6A 5'UTR       24284625//24209618//25456834//24981863
chr15:75940434-75940435(+) m6A 5'UTR       24284625//24209618//25456834//24981863
chr15:75940496-75940497(+) m6A 5'UTR       24284625//25456834//24981863
chr15:75940568-75940569(+) m6A 5'UTR       24284625//25456834//24981863
chr15:75940588-75940589(+) m6A 5'UTR       24284625//25456834//24981863
chr15:75940597-75940598(+) m6A 5'UTR       24284625//25456834//24981863
chr15:75940801-75940802(+) m6A 5'UTR       24284625//24209618//25456834//24981863
chr15:75940817-75940818(+) m6A 5'UTR       24284625//24209618//25456834//24981863
chr15:75940879-75940880(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr15:75940987-75940988(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr15:75941186-75941187(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941193-75941194(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941230-75941231(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941258-75941259(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941280-75941281(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941285-75941286(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941306-75941307(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941319-75941320(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941333-75941334(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941371-75941372(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941403-75941404(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941486-75941487(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941519-75941520(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75941539-75941540(+) m6A CDS       24284625//25456834//24981863//22608085
chr15:75941570-75941571(+) m6A CDS       24284625//25456834//22608085
chr15:75941584-75941585(+) m6A CDS       24284625//25456834//22608085
chr15:75941756-75941757(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr15:75941945-75941946(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr15:75942073-75942074(+) m6A CDS       24284625//24209618//24981863//22608085
chr15:75942149-75942150(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22608085
chr15:75942159-75942160(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22608085
chr15:75942246-75942247(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75942344-75942345(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr15:75942369-75942370(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr15:75942386-75942387(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr15:75942551-75942552(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75942566-75942567(+) Am CDS       -
chr15:75942578-75942579(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75942657-75942658(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:75942734-75942735(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr15:75942851-75942852(+) m6A CDS//intron       24284625//24209618//24981863//22575960
chr15:75949425-75949426(+) m6A CDS       24284625
chr15:75949473-75949474(+) m6A CDS       24284625
chr15:75949529-75949530(+) m6A CDS       24284625//24981863
chr15:75949904-75949905(+) m6A 3'UTR       24284625
chr15:75949999-75950000(+) m6A 3'UTR       24284625
chr15:75950005-75950006(+) m6A 3'UTR       24284625
chr15:75950066-75950067(+) m6A 3'UTR       24284625
chr15:75950093-75950094(+) m6A 3'UTR       24284625//24981863
chr15:75950151-75950152(+) m6A 3'UTR       24284625//24981863
chr15:75950171-75950172(+) m6A 3'UTR       24284625//24981863
chr15:75950188-75950189(+) m6A 3'UTR       24284625//24981863
chr15:75950219-75950220(+) m6A 3'UTR       24284625//24981863
chr15:75950436-75950437(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr15:75950463-75950464(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr15:75950525-75950526(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085
chr15:75950591-75950592(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085
chr15:75950662-75950663(+) m6A 3'UTR       24284625//24209618//25456834//22575960
chr15:75950678-75950679(+) m6A 3'UTR       24284625//24209618//25456834//22575960
chr15:75951294-75951295(+) m6A 3'UTR       24284625
chr15:75951403-75951404(+) m6A 3'UTR       24284625
chr15:75951429-75951430(+) m6A 3'UTR       24284625//25456834
chr15:75951472-75951473(+) m6A 3'UTR       24284625//25456834//24981863
chr15:75951520-75951521(+) m6A 3'UTR       25456834//24981863
chr15:75951572-75951573(+) m6A 3'UTR       24209618//25456834//24981863
chr15:75951600-75951601(+) m6A 3'UTR       24209618//25456834//24981863
chr15:75951653-75951654(+) m6A 3'UTR       25456834//24981863
chr15:75951660-75951661(+) m6A 3'UTR       25456834//24981863
chr15:75951726-75951727(+) m6A 3'UTR       25456834
chr15:75951759-75951760(+) m6A 3'UTR       25456834
chr15:75952614-75952615(+) m6A 3'UTR       25456834
chr15:75952645-75952646(+) m6A 3'UTR       25456834
chr15:75952662-75952663(+) m6A 3'UTR       25456834
chr15:75952987-75952988(+) m6A 3'UTR       -
chr15:75954051-75954052(+) m6A 3'UTR       25456834//24981863
chr15:75954091-75954092(+) m6A 3'UTR       25456834//24981863
chr15:75954097-75954098(+) m6A 3'UTR       25456834//24981863
chr15:75954138-75954139(+) m6A 3'UTR       24284625//24981863
chr15:75954212-75954213(+) m6A 3'UTR       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-6836-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
SNX33
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-6836-5p
Interactor2: SNX33

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Downregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

Starting a new search, please wait ...