Detail Information

Basic Information:


  VIRBase ID:  

HHID00099593

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-6836-5p:           PROSER3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-6836-5p PROSER3
miRBase
Accession/Entrez ID		 MIMAT0027574 148137
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C19orf55

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-6836-5p
rs1175923434 chr7:2257551    A/T
rs1397797431 chr7:2257557    G/T
rs1402374487 chr7:2257560    C/T
rs373301992 chr7:2257555    C/T
rs751019973 chr7:2257572    G/A
rs751019973 chr7:2257572    G/T
rs752401585 chr7:2257559    G/A
rs752401585 chr7:2257559    G/C
rs762697510 chr7:2257562    A/T
rs765066033 chr7:2257558    C/A
rs765066033 chr7:2257558    C/T
rs767238780 chr7:2257563    G/A
rs767238780 chr7:2257563    G/T
rs776617786 chr7:2257553    G/A
rs776617786 chr7:2257553    G/T
rs1378787511 chr7:2257565    G/A
rs747250755 chr7:2257571    C/CT
rs756757197 chr7:2257570    G/A
rs768462924 chr7:2257568    C/G
rs780841384 chr7:2257571    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PROSER3
chr19:36254264(+) A-I      intronic
chr19:36254833(+) A-I      intronic
chr19:36254279(+) A-I      intronic
chr19:36255303(+) A-I      intronic
chr19:36255396(+) A-I      intronic
chr19:36255482(+) A-I      intronic
chr19:36255568(+) A-I      intronic
chr19:36256387(+) A-I      intronic
chr19:36256465(+) A-I      intronic
chr19:36256546(+) A-I      intronic
chr19:36256651(+) A-I      intronic
chr19:36256656(+) A-I      intronic
chr19:36257195(+) A-I      intronic
chr19:36257198(+) A-I      intronic
chr19:36254232(+) A-I      intronic
chr19:36254250(+) A-I      intronic
chr19:36254368(+) A-I      intronic
chr19:36254898(+) A-I      intronic
chr19:36254485(+) A-I      intronic
chr19:36254509(+) A-I      intronic
chr19:36254522(+) A-I      intronic
chr19:36254531(+) A-I      intronic
chr19:36254606(+) A-I      intronic
chr19:36254618(+) A-I      intronic
chr19:36254765(+) A-I      intronic
chr19:36254654(+) A-I      intronic
chr19:36254667(+) A-I      intronic
chr19:36254668(+) A-I      intronic
chr19:36254546(+) A-I      intronic
chr19:36254359(+) A-I      intronic
chr19:36251142(+) A-I      intronic
chr19:36251199(+) A-I      intronic
chr19:36252711(+) A-I      intronic
chr19:36254158(+) A-I      intronic
chr19:36254202(+) A-I      intronic
chr19:36254928(+) A-I      intronic
chr19:36254203(+) A-I      intronic
chr19:36256704(+) A-I      intronic
chr19:36254951(+) A-I      intronic
chr19:36254290(+) A-I      intronic
chr19:36254828(+) A-I      intronic
chr19:36254614(+) A-I      intronic
chr19:36256671(+) A-I      intronic
chr19:36256533(+) A-I      intronic
chr19:36256612(+) A-I      intronic
chr19:36254830(+) A-I      intronic
chr19:36255343(+) A-I      intronic
chr19:36254287(+) A-I      intronic
chr19:36257348(+) A-I      intronic
chr19:36254534(+) A-I      intronic
chr19:36257269(+) A-I      intronic
chr19:36254818(+) A-I      intronic
chr19:36254375(+) A-I      intronic
chr19:36254886(+) A-I      intronic
chr19:36254733(+) A-I      intronic
chr19:36254244(+) A-I      intronic
chr19:36256633(+) A-I      intronic
chr19:36256360(+) A-I      intronic
chr19:36254771(+) A-I      intronic
chr19:36255436(+) A-I      intronic
chr19:36254260(+) A-I      intronic
chr19:36254923(+) A-I      intronic
chr19:36251258(+) A-I      intronic
chr19:36255372(+) A-I      intronic
chr19:36254167(+) A-I      intronic
chr19:36254460(+) A-I      intronic
chr19:36256636(+) A-I      intronic
chr19:36256568(+) A-I      intronic
chr19:36256716(+) A-I      intronic
chr19:36251231(+) A-I      intronic
chr19:36254242(+) A-I      intronic
chr19:36254767(+) A-I      intronic
chr19:36257187(+) A-I      intronic
chr19:36254172(+) A-I      intronic
chr19:36255371(+) A-I      intronic
chr19:36254924(+) A-I      intronic
chr19:36254316(+) A-I      intronic
chr19:36251319(+) A-I      intronic
chr19:36254669(+) A-I      intronic
chr19:36252396(+) A-I      intronic
chr19:36254589(+) A-I      intronic
chr19:36255308(+) A-I      intronic
chr19:36254681(+) A-I      intronic
chr19:36254853(+) A-I      intronic
chr19:36256657(+) A-I      intronic
chr19:36254768(+) A-I      intronic
chr19:36254544(+) A-I      intronic
chr19:36254498(+) A-I      intronic
chr19:36254592(+) A-I      intronic
chr19:36254469(+) A-I      intronic
chr19:36254759(+) A-I      intronic
chr19:36254911(+) A-I      intronic
chr19:36252667(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PROSER3
chr19:36249120-36249121(+) m6A 5'UTR//CDS//exon       25456834//24981863//22608085
chr19:36249151-36249152(+) m6A exon//intron       25456834//24981863//22608085
chr19:36249171-36249172(+) m6A exon//intron       25456834//24981863//22608085
chr19:36249245-36249246(+) m6A exon//intron       24981863
chr19:36249892-36249893(+) m6A exon//intron       25456834//24981863//22608085
chr19:36249929-36249930(+) m6A exon//intron       24284625//25456834//24981863//22608085
chr19:36249985-36249986(+) m6A exon//intron       24284625//25456834//24981863//22608085
chr19:36250020-36250021(+) m6A exon//intron       24284625//25456834//24981863//22608085
chr19:36250039-36250040(+) m6A exon//intron       24284625//25456834//24981863//22608085
chr19:36250077-36250078(+) m6A exon//intron       24284625//25456834//24981863//22608085
chr19:36250102-36250103(+) m6A exon//intron       24284625//25456834//24981863
chr19:36250238-36250239(+) m6A 5'UTR//exon//intron       24284625//24981863
chr19:36250254-36250255(+) m6A 5'UTR//exon//intron       24981863
chr19:36250356-36250357(+) m6A 5'UTR//CDS//exon//intron       24981863
chr19:36250377-36250378(+) m6A exon//intron       24981863
chr19:36250803-36250804(+) m6A 5'UTR//CDS//exon//intron       24284625
chr19:36250832-36250833(+) m6A 5'UTR//CDS//exon//intron       24284625
chr19:36253023-36253024(+) m6A 3'UTR//CDS//exon//intron       -
chr19:36255770-36255771(+) m6A 3'UTR//CDS//intron       -
chr19:36255785-36255786(+) m6A 3'UTR//CDS//intron       -
chr19:36256031-36256032(+) m6A CDS//exon//intron       24284625//24981863
chr19:36257694-36257695(+) m6A CDS//exon//intron       24284625
chr19:36257789-36257790(+) m6A CDS//exon//intron       -
chr19:36258271-36258272(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863
chr19:36258514-36258515(+) m6A 3'UTR//intron       -
chr19:36258585-36258586(+) m6A 3'UTR//intron       -
chr19:36258659-36258660(+) m6A 3'UTR//intron       -
chr19:36259184-36259185(+) m6A exon//intron       24284625//24981863//22575960
chr19:36259193-36259194(+) m6A exon//intron       24284625//24981863//22575960
chr19:36259337-36259338(+) m6A 3'UTR//CDS//exon       24981863
chr19:36259349-36259350(+) m6A 3'UTR//CDS//exon       24981863
chr19:36259440-36259441(+) m6A 3'UTR//CDS//exon       24981863
chr19:36259628-36259629(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085
chr19:36259678-36259679(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr19:36259683-36259684(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr19:36259695-36259696(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr19:36259701-36259702(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr19:36259744-36259745(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr19:36259752-36259753(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr19:36260549-36260550(+) m6A 3'UTR//intron       -
chr19:36260556-36260557(+) m6A 3'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-6836-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
PROSER3
Exosome Blood     -
Membrane HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-6836-5p
Interactor2: PROSER3

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Downregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

Starting a new search, please wait ...