Detail Information

Basic Information:


  VIRBase ID:  

HHID00099588

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-6836-5p:           TBC1D16:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-6836-5p TBC1D16
miRBase
Accession/Entrez ID		 MIMAT0027574 125058
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-6836-5p
rs1175923434 chr7:2257551    A/T
rs1397797431 chr7:2257557    G/T
rs1402374487 chr7:2257560    C/T
rs373301992 chr7:2257555    C/T
rs751019973 chr7:2257572    G/A
rs751019973 chr7:2257572    G/T
rs752401585 chr7:2257559    G/A
rs752401585 chr7:2257559    G/C
rs762697510 chr7:2257562    A/T
rs765066033 chr7:2257558    C/A
rs765066033 chr7:2257558    C/T
rs767238780 chr7:2257563    G/A
rs767238780 chr7:2257563    G/T
rs776617786 chr7:2257553    G/A
rs776617786 chr7:2257553    G/T
rs1378787511 chr7:2257565    G/A
rs747250755 chr7:2257571    C/CT
rs756757197 chr7:2257570    G/A
rs768462924 chr7:2257568    C/G
rs780841384 chr7:2257571    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TBC1D16
chr17:77931036(-) A-I      intronic
chr17:77930894(-) A-I      intronic
chr17:77946269(-) A-I      intronic
chr17:77956546(-) A-I      intronic
chr17:77956440(-) A-I      intronic
chr17:77946798(-) A-I      intronic
chr17:77946693(-) A-I      intronic
chr17:77972224(-) A-I      intronic
chr17:77972217(-) A-I      intronic
chr17:77972216(-) A-I      intronic
chr17:77973624(-) A-I      intronic
chr17:77973638(-) A-I      intronic
chr17:77978579(-) A-I      intronic
chr17:77992310(-) A-I      intronic
chr17:77992327(-) A-I      intronic
chr17:77996232(-) A-I      intronic
chr17:77935575(-) A-I      intronic
chr17:77936111(-) A-I      intronic
chr17:77936291(-) A-I      intronic
chr17:77936293(-) A-I      intronic
chr17:77944950(-) A-I      intronic
chr17:77946622(-) A-I      intronic
chr17:77946628(-) A-I      intronic
chr17:77946715(-) A-I      intronic
chr17:77946718(-) A-I      intronic
chr17:77946757(-) A-I      intronic
chr17:77972238(-) A-I      intronic
chr17:77972259(-) A-I      intronic
chr17:77973479(-) A-I      intronic
chr17:77973480(-) A-I      intronic
chr17:77996203(-) A-I      intronic
chr17:77988073(-) A-I      intronic
chr17:77948326(-) A-I      intronic
chr17:77995107(-) A-I      intronic
chr17:78002640(-) A-I      intronic
chr17:77972423(-) A-I      intronic
chr17:77972255(-) A-I      intronic
chr17:77948328(-) A-I      intronic
chr17:77978594(-) A-I      intronic
chr17:77957931(-) A-I      intronic
chr17:77972833(-) A-I      intronic
chr17:77978754(-) A-I      intronic
chr17:77946746(-) A-I      intronic
chr17:77971707(-) A-I      intronic
chr17:77943497(-) A-I      intronic
chr17:77946873(-) A-I      intronic
chr17:77946759(-) A-I      intronic
chr17:77977736(-) A-I      intronic
chr17:77969578(-) A-I      intronic
chr17:77972907(-) A-I      intronic
chr17:77971824(-) A-I      intronic
chr17:77948230(-) A-I      intronic
chr17:77972194(-) A-I      intronic
chr17:77996573(-) A-I      intronic
chr17:78008136(-) A-I      intronic
chr17:77948310(-) A-I      intronic
chr17:77996320(-) A-I      intronic
chr17:78002138(-) A-I      intronic
chr17:77971789(-) A-I      intronic
chr17:78002206(-) A-I      intronic
chr17:77971885(-) A-I      intronic
chr17:77971667(-) A-I      intronic
chr17:77972417(-) A-I      intronic
chr17:77936082(-) A-I      intronic
chr17:77979014(-) A-I      intronic
chr17:78002158(-) A-I      intronic
chr17:77972852(-) A-I      intronic
chr17:77972352(-) A-I      intronic
chr17:77956395(-) A-I      intronic
chr17:77977677(-) A-I      intronic
chr17:77978559(-) A-I      intronic
chr17:77972798(-) A-I      intronic
chr17:77959077(-) A-I      intronic
chr17:77996309(-) A-I      intronic
chr17:77972834(-) A-I      intronic
chr17:77936567(-) A-I      intronic
chr17:77973542(-) A-I      intronic
chr17:77988044(-) A-I      intronic
chr17:77977761(-) A-I      intronic
chr17:78000102(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TBC1D16
chr17:77906161-77906162(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr17:77906185-77906186(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr17:77906245-77906246(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr17:77906261-77906262(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr17:77906422-77906423(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr17:77906441-77906442(-) m6A 3'UTR       24981863//27773535//22608085
chr17:77906554-77906555(-) m6A 3'UTR       24284625//27773535//22608085
chr17:77906709-77906710(-) m6A 3'UTR       24981863//27773535//22608085
chr17:77906845-77906846(-) m6A 3'UTR       24209618//24981863//27773535
chr17:77906939-77906940(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr17:77906964-77906965(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr17:77906972-77906973(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr17:77907001-77907002(-) m6A 3'UTR       24284625//24981863//27773535
chr17:77907073-77907074(-) m6A 3'UTR       24284625//24981863//27773535
chr17:77907099-77907100(-) m6A 3'UTR       24284625//24981863//27773535
chr17:77907155-77907156(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr17:77907199-77907200(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr17:77907214-77907215(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr17:77907293-77907294(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr17:77907369-77907370(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr17:77907375-77907376(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr17:77907419-77907420(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr17:77907483-77907484(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr17:77907490-77907491(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr17:77907520-77907521(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr17:77907590-77907591(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr17:77907663-77907664(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr17:77907942-77907943(-) m6A 3'UTR       24284625
chr17:77908093-77908094(-) m6A 3'UTR       24284625//25456834//24981863//27773536
chr17:77908132-77908133(-) m6A 3'UTR       24284625//25456834//24981863//27773536
chr17:77908194-77908195(-) m6A 3'UTR       24284625//25456834//24981863//27773536//22608085
chr17:77908242-77908243(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr17:77908281-77908282(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr17:77908464-77908465(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr17:77908620-77908621(-) m6A 3'UTR       24284625//27773535
chr17:77909106-77909107(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773536
chr17:77909155-77909156(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773536
chr17:77909233-77909234(-) m6A 3'UTR       24284625//25456834
chr17:77909349-77909350(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr17:77909389-77909390(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr17:77909442-77909443(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr17:77909516-77909517(-) m6A 3'UTR       24284625//25456834//24981863
chr17:77909795-77909796(-) m6A 3'UTR       24981863
chr17:77909835-77909836(-) m6A 3'UTR       24981863
chr17:77909863-77909864(-) m6A 3'UTR       24284625//24981863
chr17:77909986-77909987(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr17:77910109-77910110(-) Tm 3'UTR       -
chr17:77910178-77910179(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27773536//22608085
chr17:77910203-77910204(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27773536//22608085
chr17:77910236-77910237(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr17:77910250-77910251(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr17:77910631-77910632(-) m6A 3'UTR       24284625
chr17:77911157-77911158(-) m6A 3'UTR       24284625//24209618
chr17:77911188-77911189(-) m6A 3'UTR       24284625//24209618
chr17:77911263-77911264(-) m6A 3'UTR       24284625//24209618
chr17:77911427-77911428(-) m6A 3'UTR       24284625//24209618//27773536
chr17:77911434-77911435(-) m6A 3'UTR       24284625//24209618//27773536
chr17:77911641-77911642(-) m6A 3'UTR       24284625
chr17:77911867-77911868(-) m6A 3'UTR       24981863
chr17:77911940-77911941(-) m6A 3'UTR       -
chr17:77911951-77911952(-) m6A 3'UTR       24284625
chr17:77912066-77912067(-) m6A 3'UTR       24284625//25456834//24981863//27773536
chr17:77912076-77912077(-) m6A 3'UTR       24284625//25456834//24981863//27773536
chr17:77912102-77912103(-) m6A 3'UTR       24284625//25456834//24981863//27773536
chr17:77912183-77912184(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr17:77912194-77912195(-) m6A 3'UTR       24284625//25456834//27773535
chr17:77912292-77912293(-) m6A 3'UTR       24284625
chr17:77912324-77912325(-) m6A 3'UTR       24284625
chr17:77912520-77912521(-) m6A 3'UTR       24284625//25456834
chr17:77912591-77912592(-) m6A 3'UTR       24284625//25456834
chr17:77912620-77912621(-) m6A 3'UTR       24284625//25456834
chr17:77912696-77912697(-) m6A 3'UTR       24284625
chr17:77913069-77913070(-) m6A 3'UTR       24284625//25456834
chr17:77913134-77913135(-) m6A 3'UTR       24284625//24209618//25456834
chr17:77913289-77913290(-) m6A 3'UTR       24284625//24209618//25456834//22608085
chr17:77913301-77913302(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr17:77913319-77913320(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr17:77913366-77913367(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:77913428-77913429(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:77913460-77913461(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:77913517-77913518(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:77913630-77913631(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr17:77913638-77913639(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr17:77913659-77913660(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr17:77913677-77913678(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr17:77913683-77913684(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr17:77913958-77913959(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr17:77913987-77913988(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr17:77914149-77914150(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:77914174-77914175(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:77914191-77914192(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:77914208-77914209(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:77914237-77914238(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:77914283-77914284(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:77914314-77914315(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr17:77914519-77914520(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr17:77914554-77914555(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr17:77914570-77914571(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr17:77914622-77914623(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:77914637-77914638(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:77914814-77914815(-) m6A CDS       24284625//27773536//22608085
chr17:77915898-77915899(-) m6A CDS       24284625//27773536
chr17:77915922-77915923(-) m6A CDS       24284625//27773536
chr17:77916000-77916001(-) m6A CDS       24284625
chr17:77921449-77921450(-) m6A CDS       24284625
chr17:77921459-77921460(-) m6A CDS       24284625
chr17:77921492-77921493(-) m6A CDS       24284625
chr17:77921525-77921526(-) m6A CDS       24284625
chr17:77921567-77921568(-) m6A CDS       24284625
chr17:77921615-77921616(-) m6A CDS       24284625
chr17:77922694-77922695(-) m6A CDS       24284625//24981863
chr17:77922718-77922719(-) m6A CDS       24284625//24981863
chr17:77922727-77922728(-) Cm CDS       -
chr17:77922728-77922729(-) m6A CDS       24284625//24981863
chr17:77922745-77922746(-) m6A CDS       24284625//24981863
chr17:77924358-77924359(-) m6A 5'UTR//CDS       24284625//27773535
chr17:77924571-77924572(-) m6A 5'UTR//intron       24284625//27773535
chr17:77925309-77925310(-) m6A CDS       24284625
chr17:77926491-77926492(-) m6A 5'UTR//CDS       24284625//27773536
chr17:77926558-77926559(-) m6A 5'UTR//CDS       24284625//25456834//27773536//22608085
chr17:77926578-77926579(-) m6A 5'UTR//CDS       24284625//24209618//25456834//27773536//22608085
chr17:77966042-77966043(-) m6A intron       27773535//27773536
chr17:77984045-77984046(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:77984051-77984052(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:77984069-77984070(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:77984095-77984096(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:77984288-77984289(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr17:77984318-77984319(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr17:77987221-77987222(-) m6A CDS       24284625//27773536
chr17:77987299-77987300(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536
chr17:77987359-77987360(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536
chr17:78009598-78009599(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-6836-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
TBC1D16
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-6836-5p
Interactor2: TBC1D16

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Downregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

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