Detail Information

Basic Information:


  VIRBase ID:  

HHID00099569

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-6836-5p:           SLC45A4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-6836-5p SLC45A4
miRBase
Accession/Entrez ID		 MIMAT0027574 57210
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-6836-5p
rs1175923434 chr7:2257551    A/T
rs1397797431 chr7:2257557    G/T
rs1402374487 chr7:2257560    C/T
rs373301992 chr7:2257555    C/T
rs751019973 chr7:2257572    G/A
rs751019973 chr7:2257572    G/T
rs752401585 chr7:2257559    G/A
rs752401585 chr7:2257559    G/C
rs762697510 chr7:2257562    A/T
rs765066033 chr7:2257558    C/A
rs765066033 chr7:2257558    C/T
rs767238780 chr7:2257563    G/A
rs767238780 chr7:2257563    G/T
rs776617786 chr7:2257553    G/A
rs776617786 chr7:2257553    G/T
rs1378787511 chr7:2257565    G/A
rs747250755 chr7:2257571    C/CT
rs756757197 chr7:2257570    G/A
rs768462924 chr7:2257568    C/G
rs780841384 chr7:2257571    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC45A4
chr8:142268906(-) A-I      intronic
chr8:142316790(-) A-I      intronic
chr8:142268904(-) A-I      intronic
chr8:142267218(-) A-I      intronic
chr8:142267121(-) A-I      intronic
chr8:142267117(-) A-I      intronic
chr8:142265580(-) A-I      intronic
chr8:142265404(-) A-I      intronic
chr8:142265299(-) A-I      intronic
chr8:142267132(-) A-I      intronic
chr8:142314333(-) A-I      intronic
chr8:142314330(-) A-I      intronic
chr8:142313291(-) A-I      intronic
chr8:142311642(-) A-I      intronic
chr8:142301130(-) A-I      intronic
chr8:142301127(-) A-I      intronic
chr8:142301123(-) A-I      intronic
chr8:142301112(-) A-I      intronic
chr8:142301045(-) A-I      intronic
chr8:142291294(-) A-I      intronic
chr8:142284139(-) A-I      intronic
chr8:142267224(-) A-I      intronic
chr8:142285622(-) A-I      intronic
chr8:142265419(-) A-I      intronic
chr8:142312570(-) A-I      intronic
chr8:142313159(-) A-I      intronic
chr8:142286257(-) A-I      intronic
chr8:142286274(-) A-I      intronic
chr8:142265284(-) A-I      intronic
chr8:142314542(-) A-I      intronic
chr8:142312626(-) A-I      intronic
chr8:142267223(-) A-I      intronic
chr8:142306318(-) A-I      intronic
chr8:142306431(-) A-I      intronic
chr8:142313228(-) A-I      intronic
chr8:142234686(-) A-I      intronic
chr8:142286234(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC45A4
chr8:142217570-142217571(-) m6A 3'UTR       24981863
chr8:142217649-142217650(-) m6A 3'UTR       24981863
chr8:142217661-142217662(-) m6A 3'UTR       24284625//25456834//24981863
chr8:142217681-142217682(-) m6A 3'UTR       24284625//25456834//24981863
chr8:142217705-142217706(-) m6A 3'UTR       24284625//25456834//24981863
chr8:142217761-142217762(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr8:142217767-142217768(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr8:142217839-142217840(-) m6A 3'UTR       24284625//24981863//27371828
chr8:142218101-142218102(-) m6A 3'UTR       24981863
chr8:142218167-142218168(-) m6A 3'UTR       24981863
chr8:142218236-142218237(-) m6A 3'UTR       24981863
chr8:142218262-142218263(-) m6A 3'UTR       24981863
chr8:142218288-142218289(-) m6A 3'UTR       24981863
chr8:142218303-142218304(-) m6A 3'UTR       24981863
chr8:142218947-142218948(-) m6A 3'UTR       24981863
chr8:142219446-142219447(-) m6A 3'UTR       -
chr8:142219518-142219519(-) m6A 3'UTR       -
chr8:142219638-142219639(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960
chr8:142219723-142219724(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr8:142219782-142219783(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr8:142219870-142219871(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828
chr8:142220108-142220109(-) m6A 3'UTR       24284625//27773535
chr8:142220177-142220178(-) m6A 3'UTR       24981863//27773535
chr8:142220259-142220260(-) m6A 3'UTR       24284625//24981863
chr8:142220280-142220281(-) m6A 3'UTR       24284625//24981863
chr8:142220464-142220465(-) m6A 3'UTR       25456834//24981863
chr8:142220497-142220498(-) m6A 3'UTR       25456834//24981863
chr8:142220518-142220519(-) m6A 3'UTR       25456834//24981863
chr8:142220527-142220528(-) m6A 3'UTR       25456834//24981863
chr8:142220746-142220747(-) m6A 3'UTR       24981863//27773535
chr8:142220880-142220881(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr8:142220916-142220917(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:142220963-142220964(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:142220980-142220981(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr8:142221020-142221021(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:142221084-142221085(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:142221113-142221114(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:142221160-142221161(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr8:142221170-142221171(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr8:142221184-142221185(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr8:142221301-142221302(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr8:142221363-142221364(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr8:142221394-142221395(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr8:142221519-142221520(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr8:142221546-142221547(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828
chr8:142221634-142221635(-) m6A 3'UTR//CDS       25456834//24981863
chr8:142222195-142222196(-) m6A 3'UTR//intron       24981863
chr8:142222205-142222206(-) m6A 3'UTR//intron       24981863
chr8:142222306-142222307(-) m6A CDS       25456834//24981863//27371828//27773536
chr8:142222316-142222317(-) m6A CDS       25456834//24981863//27371828//27773536
chr8:142222368-142222369(-) m6A CDS       25456834//24981863//27371828//27773536
chr8:142228264-142228265(-) m6A CDS       24284625//25456834//24981863//27371828//27773536
chr8:142228293-142228294(-) m6A CDS       24284625//25456834//24981863//27371828//27773536
chr8:142228323-142228324(-) m6A CDS       24284625//25456834//24981863//27371828//27773536
chr8:142228533-142228534(-) m6A CDS       25456834//24981863//27371828
chr8:142228624-142228625(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr8:142228678-142228679(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr8:142228782-142228783(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr8:142228794-142228795(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr8:142228836-142228837(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr8:142228851-142228852(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr8:142229046-142229047(-) m6A CDS       24284625//25456834//24981863//27371828//22575960
chr8:142229053-142229054(-) m6A CDS       24284625//25456834//24981863//27371828//22575960
chr8:142229077-142229078(-) m6A CDS       24284625//25456834//24981863//22575960
chr8:142229083-142229084(-) m6A CDS       24284625//25456834//24981863//22575960
chr8:142229088-142229089(-) m6A CDS       24284625//25456834//24981863//22575960
chr8:142229780-142229781(-) m6A 5'UTR//CDS       24284625
chr8:142229795-142229796(-) m6A 5'UTR//CDS       24284625
chr8:142262476-142262477(-) m6A intron       27371828//22608085
chr8:142262512-142262513(-) m6A intron       27371828//22608085
chr8:142262532-142262533(-) m6A intron       27371828//22608085
chr8:142262548-142262549(-) m6A intron       27371828//22608085
chr8:142262584-142262585(-) m6A intron       27371828//22608085
chr8:142262620-142262621(-) m6A intron       22608085
chr8:142262656-142262657(-) m6A intron       22608085
chr8:142263286-142263287(-) m6A intron       22608085
chr8:142263302-142263303(-) m6A intron       22608085
chr8:142264120-142264121(-) m6A CDS//intron       25456834
chr8:142264194-142264195(-) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085
chr8:142264216-142264217(-) m6A CDS//exon//intron       24284625//25456834//24981863//22608085
chr8:142264224-142264225(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr8:142264257-142264258(-) m6A CDS//exon//intron       24284625//25456834//24981863//26404942//27773535//22608085
chr8:142264436-142264437(-) m6A exon//intron       27773535//22608085
chr8:142264564-142264565(-) m6A exon//intron       24284625//24981863//27773535//22575960//22608085
chr8:142264616-142264617(-) m6A exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:142264694-142264695(-) m6A exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:142318197-142318198(-) m6A 5'UTR//exon       24981863//27773535//22575960//22608085
chr8:142318305-142318306(-) m6A 5'UTR//exon       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-6836-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
SLC45A4
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-6836-5p
Interactor2: SLC45A4

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Downregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

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