Detail Information

Basic Information:


  VIRBase ID:  

HHID00099559

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-6836-5p:           FHOD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-6836-5p FHOD1
miRBase
Accession/Entrez ID		 MIMAT0027574 29109
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - FHOS

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-6836-5p
rs1175923434 chr7:2257551    A/T
rs1397797431 chr7:2257557    G/T
rs1402374487 chr7:2257560    C/T
rs373301992 chr7:2257555    C/T
rs751019973 chr7:2257572    G/A
rs751019973 chr7:2257572    G/T
rs752401585 chr7:2257559    G/A
rs752401585 chr7:2257559    G/C
rs762697510 chr7:2257562    A/T
rs765066033 chr7:2257558    C/A
rs765066033 chr7:2257558    C/T
rs767238780 chr7:2257563    G/A
rs767238780 chr7:2257563    G/T
rs776617786 chr7:2257553    G/A
rs776617786 chr7:2257553    G/T
rs1378787511 chr7:2257565    G/A
rs747250755 chr7:2257571    C/CT
rs756757197 chr7:2257570    G/A
rs768462924 chr7:2257568    C/G
rs780841384 chr7:2257571    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FHOD1
chr16:67267235(-) A-I      intronic
chr16:67276109(-) A-I      intronic
chr16:67276117(-) A-I      intronic
chr16:67269250(-) A-I      intronic
chr16:67269215(-) A-I      intronic
chr16:67268810(-) A-I      intronic
chr16:67268794(-) A-I      intronic
chr16:67268730(-) A-I      intronic
chr16:67266383(-) A-I      intronic
chr16:67266310(-) A-I      intronic
chr16:67266300(-) A-I      intronic
chr16:67266298(-) A-I      intronic
chr16:67266262(-) A-I      intronic
chr16:67266231(-) A-I      intronic
chr16:67269325(-) A-I      intronic
chr16:67269324(-) A-I      intronic
chr16:67268997(-) A-I      intronic
chr16:67267057(-) A-I      intronic
chr16:67268679(-) A-I      intronic
chr16:67268741(-) A-I      intronic
chr16:67268680(-) A-I      intronic
chr16:67269228(-) A-I      intronic
chr16:67266416(-) A-I      intronic
chr16:67266692(-) A-I      intronic
chr16:67266606(-) A-I      intronic
chr16:67266797(-) A-I      intronic
chr16:67269190(-) A-I      intronic
chr16:67268745(-) A-I      intronic
chr16:67269381(-) A-I      intronic
chr16:67266370(-) A-I      intronic
chr16:67268886(-) A-I      intronic
chr16:67266839(-) A-I      intronic
chr16:67266682(-) A-I      intronic
chr16:67267086(-) A-I      intronic
chr16:67269407(-) A-I      intronic
chr16:67269276(-) A-I      intronic
chr16:67276045(-) A-I      intronic
chr16:67274228(-) A-I      intronic
chr16:67269346(-) A-I      intronic
chr16:67274307(-) A-I      intronic
chr16:67269370(-) A-I      intronic
chr16:67268870(-) A-I      intronic
chr16:67269211(-) A-I      intronic
chr16:67266691(-) A-I      intronic
chr16:67269000(-) A-I      intronic
chr16:67279508(-) A-I      intronic
chr16:67268862(-) A-I      intronic
chr16:67266770(-) A-I      intronic
chr16:67267316(-) A-I      intronic
chr16:67268922(-) A-I      intronic
chr16:67268800(-) A-I      intronic
chr16:67267095(-) A-I      intronic
chr16:67266838(-) A-I      intronic
chr16:67279579(-) A-I      intronic
chr16:67268735(-) A-I      intronic
chr16:67268882(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FHOD1
chr16:67268735(-) A-I intron -    21960545
chr16:67268862(-) A-I intron -    21960545
chr16:67268870(-) A-G intron -    22484847
chr16:67268882(-) A-G intron -    22484847
chr16:67268886(-) A-G intron -    22484847
chr16:67268922(-) A-G intron -    22484847
chr16:67269211(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FHOD1
chr16:67263444-67263445(-) m6A 3'UTR//exon       24284625
chr16:67263502-67263503(-) m6A 3'UTR//exon       24284625
chr16:67263509-67263510(-) m6A 3'UTR//exon       24284625
chr16:67263568-67263569(-) m6A CDS//exon       24284625//27371828
chr16:67263659-67263660(-) m6A exon//intron       27371828
chr16:67263828-67263829(-) m6A CDS//exon       27371828
chr16:67263994-67263995(-) m6A CDS//exon       27371828
chr16:67264239-67264240(-) m6A 3'UTR//CDS//exon       27371828//27773536
chr16:67264302-67264303(-) m6A 3'UTR//CDS//exon       27371828//27773536
chr16:67264560-67264561(-) m6A 3'UTR//CDS//exon       27773536
chr16:67264668-67264669(-) m6A 3'UTR//CDS//exon       27773536
chr16:67267721-67267722(-) m6A 3'UTR//CDS//exon       25456834//24981863//27371828
chr16:67267729-67267730(-) m6A 3'UTR//CDS//exon       25456834//24981863//27371828
chr16:67267902-67267903(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535//27371828
chr16:67267938-67267939(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828
chr16:67267944-67267945(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828
chr16:67267971-67267972(-) m6A 3'UTR//CDS//exon       24284625//24981863//27371828
chr16:67267977-67267978(-) m6A 3'UTR//CDS//exon       24284625//24981863//27371828
chr16:67268122-67268123(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536//22575960
chr16:67268140-67268141(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536//22575960
chr16:67268151-67268152(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536
chr16:67268266-67268267(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536
chr16:67268301-67268302(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536
chr16:67268340-67268341(-) m6A 3'UTR//CDS//exon       27371828//27773536
chr16:67270522-67270523(-) m6A 3'UTR//CDS//exon       27773536
chr16:67270873-67270874(-) m6A 3'UTR//CDS//exon       27773536
chr16:67270982-67270983(-) m1A 3'UTR//CDS//exon       26863410
chr16:67270991-67270992(-) m6A 3'UTR//CDS//exon       27773536
chr16:67281239-67281240(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960
chr16:67281296-67281297(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960
chr16:67281348-67281349(-) m6A 5'UTR//exon       24284625//25456834//24981863//27371828//27773536
chr16:67281396-67281397(-) m6A 5'UTR       25456834//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-6836-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
FHOD1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-6836-5p
Interactor2: FHOD1

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Downregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

Starting a new search, please wait ...