Detail Information

Basic Information:


  VIRBase ID:  

HHID00099263

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-329-5p:           NUDT21:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-329-5p NUDT21
miRBase
Accession/Entrez ID		 MIMAT0026555 11051
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CFIM25//CPSF5

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-329-5p
rs1234371905 chr14:101026810    T/G
rs745457583 chr14:101026809    GT/G
rs753464954 chr14:101026819    C/T
rs986633556 chr14:101026815    G/C
rs986633556 chr14:101026815    G/T
rs1050442965 chr14:101027122    C/T
rs1244763083 chr14:101027128    T/G
rs1247447111 chr14:101027125    G/A
rs1299172342 chr14:101027124    G/A
rs1345199839 chr14:101027123    TG/T
rs1380199006 chr14:101027126    GT/G
rs1383457999 chr14:101027132    G/A
rs1386240186 chr14:101027114    G/A
rs773780315 chr14:101027131    T/C
rs1346812250 chr14:101026800    G/A
rs765828605 chr14:101026804    T/C
rs778550662 chr14:101026800    GT/G
rs778550662 chr14:101026800    GT/GTT
rs1288955690 chr14:101027116    G/A
rs1382304316 chr14:101027119    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NUDT21
chr16:56469204(-) A-I      intronic
chr16:56469213(-) A-I      intronic
chr16:56469214(-) A-I      intronic
chr16:56469244(-) A-I      intronic
chr16:56477292(-) A-I      intronic
chr16:56469395(-) A-I      intronic
chr16:56477301(-) A-I      intronic
chr16:56469088(-) A-I      intronic
chr16:56469200(-) A-I      intronic
chr16:56469282(-) A-I      intronic
chr16:56469394(-) A-I      intronic
chr16:56469396(-) A-I      intronic
chr16:56469624(-) A-I      intronic
chr16:56475426(-) A-I      intronic
chr16:56477118(-) A-I      intronic
chr16:56477119(-) A-I      intronic
chr16:56477127(-) A-I      intronic
chr16:56477217(-) A-I      intronic
chr16:56477221(-) A-I      intronic
chr16:56479089(-) A-I      intronic
chr16:56478894(-) A-I      intronic
chr16:56469212(-) A-I      intronic
chr16:56477261(-) A-I      intronic
chr16:56474980(-) A-I      intronic
chr16:56469173(-) A-I      intronic
chr16:56478973(-) A-I      intronic
chr16:56479009(-) A-I      intronic
chr16:56478879(-) A-I      intronic
chr16:56479074(-) A-I      intronic
chr16:56478851(-) A-I      intronic
chr16:56478933(-) A-I      intronic
chr16:56478885(-) A-I      intronic
chr16:56474941(-) A-I      intronic
chr16:56478080(-) A-I      intronic
chr16:56469108(-) A-I      intronic
chr16:56478823(-) A-I      intronic
chr16:56469174(-) A-I      intronic
chr16:56479039(-) A-I      intronic
chr16:56469474(-) A-I      intronic
chr16:56478930(-) A-I      intronic
chr16:56469210(-) A-I      intronic
chr16:56478928(-) A-I      intronic
chr16:56478084(-) A-I      intronic
chr16:56477961(-) A-I      intronic
chr16:56478384(-) A-I      intronic
chr16:56475281(-) A-I      intronic
chr16:56479057(-) A-I      intronic
chr16:56478839(-) A-I      intronic
chr16:56475245(-) A-I      intronic
chr16:56478884(-) A-I      intronic
chr16:56469203(-) A-I      intronic
chr16:56477227(-) A-I      intronic
chr16:56469471(-) A-I      intronic
chr16:56469217(-) A-I      intronic
chr16:56469382(-) A-I      intronic
chr16:56474815(-) A-I      intronic
chr16:56477359(-) A-I      intronic
chr16:56479013(-) A-I      intronic
chr16:56475277(-) A-I      intronic
chr16:56479049(-) A-I      intronic
chr16:56478196(-) A-I      intronic
chr16:56477295(-) A-I      intronic
chr16:56478194(-) A-I      intronic
chr16:56469490(-) A-I      intronic
chr16:56469205(-) A-I      intronic
chr16:56477262(-) A-I      intronic
chr16:56469298(-) A-I      intronic
chr16:56477306(-) A-I      intronic
chr16:56477365(-) A-I      intronic
chr16:56476012(-) A-I      intronic
chr16:56477381(-) A-I      intronic
chr16:56478852(-) A-I      intronic
chr16:56477942(-) A-I      intronic
chr16:56476066(-) A-I      intronic
chr16:56469299(-) A-I      intronic
chr16:56469065(-) A-I      intronic
chr16:56474840(-) A-I      intronic
chr16:56475440(-) A-I      intronic
chr16:56478972(-) A-I      intronic
chr16:56469489(-) A-I      intronic
chr16:56467888(-) A-I      intronic
chr16:56478984(-) A-I      intronic
chr16:56475956(-) A-I      intronic
chr16:56478924(-) A-I      intronic
chr16:56478974(-) A-I      intronic
chr16:56478144(-) A-I      intronic
chr16:56477358(-) A-I      intronic
chr16:56477226(-) A-I      intronic
chr16:56469211(-) A-I      intronic
chr16:56475260(-) A-I      intronic
chr16:56469078(-) A-I      intronic
chr16:56469380(-) A-I      intronic
chr16:56476021(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NUDT21
chr16:56478823(-) A-I intron -    22028664
chr16:56478839(-) A-I intron -    22028664
chr16:56478851(-) A-I intron -    22028664
chr16:56478852(-) A-I intron -    22028664
chr16:56478879(-) A-I intron -    22028664
chr16:56478885(-) A-I intron -    22028664
chr16:56478894(-) A-I intron -    22028664
chr16:56478924(-) A-I intron -    22028664
chr16:56478928(-) A-I intron -    22028664
chr16:56478930(-) A-I intron -    22028664
chr16:56478933(-) A-I intron -    22028664
chr16:56478972(-) A-I intron -    22028664
chr16:56478973(-) A-I intron -    22028664
chr16:56478974(-) A-I intron -    22028664
chr16:56478984(-) A-I intron -    22028664
chr16:56479009(-) A-I intron -    22028664
chr16:56479013(-) A-I intron -    22028664
chr16:56479039(-) A-I intron -    22028664
chr16:56479074(-) A-I intron -    22028664
chr16:56479089(-) A-I intron -    22028664
chr16:56464388(-) C-T exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NUDT21
chr16:56465647-56465648(-) m6A 3'UTR       27773535
chr16:56465687-56465688(-) m6A 3'UTR       27773535
chr16:56465706-56465707(-) m6A 3'UTR       27773535
chr16:56465972-56465973(-) m6A 3'UTR       27773535
chr16:56466022-56466023(-) m6A 3'UTR       27773535
chr16:56466033-56466034(-) m6A 3'UTR       27773535
chr16:56466040-56466041(-) m6A 3'UTR       27773535
chr16:56466106-56466107(-) m6A 3'UTR       -
chr16:56466164-56466165(-) m6A 3'UTR       -
chr16:56473080-56473081(-) m6A exon//intron       24981863
chr16:56473112-56473113(-) m6A exon//intron       24981863
chr16:56473123-56473124(-) m6A exon//intron       24981863
chr16:56473154-56473155(-) m6A exon//intron       24981863
chr16:56473179-56473180(-) m6A exon//intron       24981863
chr16:56481716-56481717(-) m6A CDS//exon       26404942
chr16:56481782-56481783(-) m6A CDS//exon       26404942//27773535
chr16:56481847-56481848(-) m6A 5'UTR//CDS//exon       26404942//27773535
chr16:56485083-56485084(-) m6A CDS//exon//intron       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-329-5p
Exosome Serum     18589210
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
NUDT21
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-329-5p
Interactor2: NUDT21

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Downregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

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