Detail Information

Basic Information:


  VIRBase ID:  

HHID00098938

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-16-1-3p:           RGS17:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-16-1-3p RGS17
miRBase
Accession/Entrez ID		 MIMAT0004489 26575
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - hRGS17//RGS-17//RGSZ2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-16-1-3p
rs377111580 chr13:50048986    C/T
rs769728617 chr13:50048992    CA/C
rs1460126106 chr13:50049003    C/A
rs1460126106 chr13:50049003    C/T
rs1468155921 chr13:50049001    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RGS17
chr6:153440662(-) A-I      intronic
chr6:153440653(-) A-I      intronic
chr6:153412802(-) A-I      intronic
chr6:153335769(-) A-I      intronic
chr6:153336865(-) A-I      intronic
chr6:153335793(-) A-I      intronic
chr6:153336846(-) A-I      intronic
chr6:153354731(-) A-I      intronic
chr6:153337067(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RGS17
chr6:153326450-153326451(-) m6A 3'UTR       24981863
chr6:153327690-153327691(-) m6A 3'UTR       24981863
chr6:153327715-153327716(-) m6A 3'UTR       24981863
chr6:153327740-153327741(-) m6A 3'UTR       24981863
chr6:153332248-153332249(-) m6A 3'UTR       24981863
chr6:153332694-153332695(-) m6A 3'UTR       24981863//22608085
chr6:153332766-153332767(-) m6A CDS       24981863//22608085
chr6:153345466-153345467(-) m6A CDS       24981863
chr6:153345484-153345485(-) m6A CDS       24981863//22608085
chr6:153345511-153345512(-) m6A CDS       24981863//22608085
chr6:153345530-153345531(-) m6A CDS       24981863//22608085
chr6:153345553-153345554(-) m6A CDS       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-16-1-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
RGS17
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-16-1-3p
Interactor2: RGS17

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Upregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

Starting a new search, please wait ...