Detail Information

Basic Information:


  VIRBase ID:  

HHID00098927

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-16-1-3p:           RNF6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-16-1-3p RNF6
miRBase
Accession/Entrez ID		 MIMAT0004489 6049
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-16-1-3p
rs377111580 chr13:50048986    C/T
rs769728617 chr13:50048992    CA/C
rs1460126106 chr13:50049003    C/A
rs1460126106 chr13:50049003    C/T
rs1468155921 chr13:50049001    T/C

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RNF6
chr13:26788137-26788138(-) m6A CDS//intron       24981863//27773535//22608085
chr13:26788274-26788275(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr13:26788280-26788281(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr13:26788294-26788295(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr13:26788333-26788334(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr13:26788355-26788356(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr13:26788384-26788385(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr13:26788402-26788403(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr13:26788461-26788462(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr13:26788474-26788475(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr13:26788503-26788504(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr13:26788539-26788540(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr13:26788655-26788656(-) m6A CDS//intron       24284625//27773535//22608085
chr13:26788688-26788689(-) m6A CDS//intron       24981863//27773535//22608085
chr13:26788757-26788758(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr13:26788783-26788784(-) Gm CDS//intron       -
chr13:26788819-26788820(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr13:26788979-26788980(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr13:26789012-26789013(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr13:26789025-26789026(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr13:26789067-26789068(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr13:26789134-26789135(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr13:26789220-26789221(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr13:26789239-26789240(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr13:26789375-26789376(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:26789417-26789418(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr13:26789429-26789430(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr13:26789506-26789507(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085
chr13:26789590-26789591(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:26789600-26789601(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr13:26789621-26789622(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr13:26789626-26789627(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr13:26789637-26789638(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr13:26789674-26789675(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr13:26792693-26792694(-) m6A CDS//exon       24981863//27773535
chr13:26792723-26792724(-) m6A CDS//exon       24981863//27773535
chr13:26793457-26793458(-) m6A exon//intron       27773535
chr13:26793569-26793570(-) m6A exon//intron       27773535
chr13:26793616-26793617(-) m6A CDS//exon       24981863//27773535
chr13:26793648-26793649(-) m6A CDS//exon       24981863//27773535
chr13:26793730-26793731(-) m6A CDS//exon       24209618//24981863//27773535//27371828
chr13:26793743-26793744(-) m6A CDS//exon       24209618//24981863//27773535//27371828
chr13:26795440-26795441(-) m6A 5'UTR//exon       24981863//27773535//27371828
chr13:26795692-26795693(-) m6A 5'UTR//exon//intron       24981863//27773535//27371828
chr13:26795700-26795701(-) m6A 5'UTR//exon//intron       24981863//27773535
chr13:26795830-26795831(-) m6A 5'UTR//intron       24981863
chr13:26796148-26796149(-) m6A 5'UTR//exon       27773536
chr13:26796169-26796170(-) m6A 5'UTR//exon       27773536
chr13:26796591-26796592(-) m6A 5'UTR       24981863
chr13:26796613-26796614(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-16-1-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
RNF6
Exosome Blood     -
Membrane K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-16-1-3p
Interactor2: RNF6

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Upregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

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