Detail Information

Basic Information:


  VIRBase ID:  

HHID00098922

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-16-1-3p:           CCNT2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-16-1-3p CCNT2
miRBase
Accession/Entrez ID		 MIMAT0004489 905
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CYCT2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-16-1-3p
rs377111580 chr13:50048986    C/T
rs769728617 chr13:50048992    CA/C
rs1460126106 chr13:50049003    C/A
rs1460126106 chr13:50049003    C/T
rs1468155921 chr13:50049001    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCNT2
chr2:135689595(+) A-I      intronic
chr2:135689694(+) A-I      intronic
chr2:135705635(+) A-I      intronic
chr2:135686975(+) A-I      intronic
chr2:135687357(+) A-I      intronic
chr2:135687395(+) A-I      intronic
chr2:135709156(+) A-I      intronic
chr2:135708140(+) A-I      intronic
chr2:135708122(+) A-I      intronic
chr2:135708051(+) A-I      intronic
chr2:135708048(+) A-I      intronic
chr2:135707595(+) A-I      intronic
chr2:135706691(+) A-I      intronic
chr2:135686940(+) A-I      intronic
chr2:135705738(+) A-I      intronic
chr2:135705729(+) A-I      intronic
chr2:135705689(+) A-I      intronic
chr2:135707999(+) A-I      intronic
chr2:135707545(+) A-I      intronic
chr2:135685926(+) A-I      intronic
chr2:135687495(+) A-I      intronic
chr2:135680680(+) A-I      intronic
chr2:135687482(+) A-I      intronic
chr2:135680673(+) A-I      intronic
chr2:135680704(+) A-I      intronic
chr2:135685879(+) A-I      intronic
chr2:135685640(+) A-I      intronic
chr2:135682205(+) A-I      intronic
chr2:135682203(+) A-I      intronic
chr2:135682200(+) A-I      intronic
chr2:135682185(+) A-I      intronic
chr2:135682149(+) A-I      intronic
chr2:135682120(+) A-I      intronic
chr2:135686067(+) A-I      intronic
chr2:135680649(+) A-I      intronic
chr2:135680641(+) A-I      intronic
chr2:135680619(+) A-I      intronic
chr2:135689720(+) A-I      intronic
chr2:135689731(+) A-I      intronic
chr2:135700709(+) A-I      intronic
chr2:135700812(+) A-I      intronic
chr2:135705628(+) A-I      intronic
chr2:135705688(+) A-I      intronic
chr2:135689721(+) A-I      intronic
chr2:135682100(+) A-I      intronic
chr2:135682084(+) A-I      intronic
chr2:135680836(+) A-I      intronic
chr2:135680772(+) A-I      intronic
chr2:135680736(+) A-I      intronic
chr2:135680731(+) A-I      intronic
chr2:135680730(+) A-I      intronic
chr2:135709172(+) A-I      intronic
chr2:135709201(+) A-I      intronic
chr2:135687153(+) A-I      intronic
chr2:135708019(+) A-I      intronic
chr2:135686969(+) A-I      intronic
chr2:135709161(+) A-I      intronic
chr2:135700872(+) A-I      intronic
chr2:135707414(+) A-I      intronic
chr2:135687098(+) A-I      intronic
chr2:135680582(+) A-I      intronic
chr2:135682083(+) A-I      intronic
chr2:135694069(+) A-I      intronic
chr2:135686913(+) A-I      intronic
chr2:135682293(+) A-I      intronic
chr2:135700891(+) A-I      intronic
chr2:135708108(+) A-I      intronic
chr2:135707636(+) A-I      intronic
chr2:135708033(+) A-I      intronic
chr2:135687010(+) A-I      intronic
chr2:135687483(+) A-I      intronic
chr2:135685746(+) A-I      intronic
chr2:135687350(+) A-I      intronic
chr2:135694115(+) A-I      intronic
chr2:135687031(+) A-I      intronic
chr2:135687362(+) A-I      intronic
chr2:135705818(+) A-I      intronic
chr2:135705661(+) A-I      intronic
chr2:135687067(+) A-I      intronic
chr2:135700817(+) A-I      intronic
chr2:135707630(+) A-I      intronic
chr2:135706411(+) A-I      intronic
chr2:135685670(+) A-I      intronic
chr2:135705766(+) A-I      intronic
chr2:135706804(+) A-I      intronic
chr2:135706622(+) A-I      intronic
chr2:135705804(+) A-I      intronic
chr2:135708030(+) A-I      intronic
chr2:135697219(+) A-I      intronic
chr2:135705730(+) A-I      intronic
chr2:135680686(+) A-I      intronic
chr2:135687456(+) A-I      intronic
chr2:135687360(+) A-I      intronic
chr2:135705768(+) A-I      intronic
chr2:135708086(+) A-I      intronic
chr2:135705833(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CCNT2
chr2:135705738(+) A-I intron -    21960545
chr2:135708084(+) A-I intron -    21960545
chr2:135708086(+) A-I intron -    21960545
chr2:135680670(+) A-G intron -    22484847
chr2:135680686(+) A-G intron -    22484847
chr2:135682083(+) A-G intron -    22484847
chr2:135682220(+) A-G intron -    22484847
chr2:135683600(+) A-T intron -    22484847
chr2:135683608(+) A-T intron -    22484847
chr2:135685670(+) A-G intron -    22484847
chr2:135686913(+) A-G intron -    22484847
chr2:135686969(+) A-G intron -    22484847
chr2:135687031(+) A-G intron -    22484847
chr2:135687350(+) A-G intron -    22484847
chr2:135687360(+) A-G intron -    22484847
chr2:135687362(+) A-G intron -    22484847
chr2:135687366(+) A-G intron -    22484847
chr2:135687404(+) A-G intron -    22484847
chr2:135687456(+) A-G intron -    22484847
chr2:135687483(+) A-G intron -    22484847
chr2:135687501(+) A-G intron -    22484847
chr2:135694069(+) A-G intron -    22484847
chr2:135694115(+) A-G intron -    22484847
chr2:135700778(+) C-T intron -    22484847
chr2:135700891(+) A-G intron -    22484847
chr2:135705766(+) A-G intron -    22484847
chr2:135705768(+) A-G intron -    22484847
chr2:135706403(+) G-A intron -    22484847
chr2:135707466(+) A-G intron -    22484847
chr2:135707630(+) A-G intron -    22484847
chr2:135707636(+) A-G intron -    22484847
chr2:135708033(+) A-G intron -    22484847
chr2:135709149(+) A-G intron -    22484847
chr2:135709182(+) A-G intron -    22484847
chr2:135709229(+) A-G intron -    22484847
chr2:135697384(+) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCNT2
chr2:135710736-135710737(+) m6A 3'UTR//intron       24981863
chr2:135710819-135710820(+) m6A 3'UTR//CDS       24981863
chr2:135710834-135710835(+) m6A 3'UTR//CDS       24284625//24981863
chr2:135710847-135710848(+) m6A 3'UTR//CDS//intron       24284625//24981863
chr2:135710917-135710918(+) m6A 3'UTR//CDS//intron       24284625//22608085
chr2:135710933-135710934(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr2:135710995-135710996(+) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr2:135711091-135711092(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr2:135711102-135711103(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085
chr2:135711107-135711108(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085
chr2:135711125-135711126(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085
chr2:135711132-135711133(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085
chr2:135711176-135711177(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085
chr2:135711212-135711213(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711278-135711279(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711356-135711357(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711363-135711364(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711410-135711411(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711422-135711423(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711514-135711515(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711590-135711591(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711626-135711627(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711662-135711663(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711688-135711689(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr2:135711788-135711789(+) m6A 3'UTR//CDS//intron       24284625//24209618//22608085
chr2:135712061-135712062(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:135712082-135712083(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:135712087-135712088(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:135712104-135712105(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:135712156-135712157(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:135712165-135712166(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:135712183-135712184(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:135712210-135712211(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:135712383-135712384(+) m6A 3'UTR       24284625//24981863//26404942//22608085
chr2:135712445-135712446(+) m6A 3'UTR       24284625//24981863//26404942//27773535//22575960//22608085
chr2:135712474-135712475(+) m6A 3'UTR       24284625//24981863//26404942//27773535//22575960//22608085
chr2:135714797-135714798(+) m6A 3'UTR       24981863//27773535
chr2:135714811-135714812(+) m6A 3'UTR       24981863//27773535
chr2:135714849-135714850(+) m6A 3'UTR       24981863//27773535
chr2:135714872-135714873(+) Y 3'UTR       26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-16-1-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CCNT2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-16-1-3p
Interactor2: CCNT2

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression Upregulation
Description The miRNA-mRNA pairs with strong correlations were selected for miRNA-mRNA binding site prediction using miRanda.

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