Detail Information

Basic Information:


  VIRBase ID:  

HHID00098889

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0067985 SPRED3
miRBase
Accession/Entrez ID		 hsa_circ_0067985 399473
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - Eve-3//spred-3

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SPRED3
chr19:38880716-38880717(+) m1A 5'UTR//intron       26863196
chr19:38880868-38880869(+) m6A 5'UTR//intron       -
chr19:38886606-38886607(+) m6A CDS       24981863
chr19:38886819-38886820(+) m6A 3'UTR       24209618//25456834//24981863
chr19:38886840-38886841(+) m6A 3'UTR       24209618//25456834//24981863
chr19:38886847-38886848(+) m6A 3'UTR       24209618//25456834//24981863
chr19:38886858-38886859(+) m6A 3'UTR       25456834//24981863
chr19:38886865-38886866(+) m6A 3'UTR       25456834//24981863
chr19:38886871-38886872(+) m6A 3'UTR       25456834//24981863
chr19:38886888-38886889(+) m6A 3'UTR       -
chr19:38886922-38886923(+) m6A 3'UTR       -
chr19:38886929-38886930(+) m6A 3'UTR       -
chr19:38886936-38886937(+) m6A 3'UTR       -
chr19:38886942-38886943(+) m6A 3'UTR       -
chr19:38886949-38886950(+) m6A 3'UTR       -
chr19:38886957-38886958(+) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0067985
Exosome Blood     -
SPRED3
Chromatin K562 cells     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0067985
Interactor2: SPRED3

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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