Detail Information

Basic Information:


  VIRBase ID:  

HHID00098883

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0067985 SAMD14
miRBase
Accession/Entrez ID		 hsa_circ_0067985 201191
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SAMD14
chr17:48204889(-) A-I      intronic
chr17:48204878(-) A-I      intronic
chr17:48204843(-) A-I      intronic
chr17:48204825(-) A-I      intronic
chr17:48204722(-) A-I      intronic
chr17:48204352(-) A-I      intronic
chr17:48204221(-) A-I      intronic
chr17:48204220(-) A-I      intronic
chr17:48204219(-) A-I      intronic
chr17:48203754(-) A-I      intronic
chr17:48203780(-) A-I      intronic
chr17:48203801(-) A-I      intronic
chr17:48203807(-) A-I      intronic
chr17:48204688(-) A-I      intronic
chr17:48204882(-) A-I      intronic
chr17:48204710(-) A-I      intronic
chr17:48204082(-) A-I      intronic
chr17:48204809(-) A-I      intronic
chr17:48204800(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SAMD14
chr17:48204082(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SAMD14
chr17:48187508-48187509(-) m6A 3'UTR       24981863
chr17:48187559-48187560(-) m6A 3'UTR       24981863
chr17:48187577-48187578(-) m6A 3'UTR       24981863
chr17:48188128-48188129(-) m6A 3'UTR       24284625
chr17:48188159-48188160(-) m6A 3'UTR       24284625
chr17:48188200-48188201(-) m6A 3'UTR       24284625
chr17:48188297-48188298(-) m6A 3'UTR       24284625
chr17:48188356-48188357(-) m6A 3'UTR       24284625
chr17:48188569-48188570(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr17:48188612-48188613(-) m6A 3'UTR       24284625//25456834//24981863
chr17:48188639-48188640(-) m6A 3'UTR       24284625//25456834//24981863
chr17:48190178-48190179(-) m6A 3'UTR//exon       27773536
chr17:48191704-48191705(-) m6A exon//intron       -
chr17:48191745-48191746(-) m6A CDS//exon//intron       -
chr17:48193486-48193487(-) m6A exon//intron       -
chr17:48207055-48207056(-) m6A 5'UTR//exon       25456834
chr17:48207106-48207107(-) m6A 5'UTR//exon       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0067985
Exosome Blood     -
SAMD14
Cytosol HeLa-S3 cells     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0067985
Interactor2: SAMD14

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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