Detail Information

Basic Information:


  VIRBase ID:  

HHID00098869

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0067985 RAB6B
miRBase
Accession/Entrez ID		 hsa_circ_0067985 51560
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAB6B
chr3:133608569(-) A-I      intronic
chr3:133608512(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAB6B
chr3:133545173-133545174(-) m6A 3'UTR       -
chr3:133545217-133545218(-) m6A 3'UTR       -
chr3:133545226-133545227(-) m6A 3'UTR       -
chr3:133545238-133545239(-) m6A 3'UTR       -
chr3:133545682-133545683(-) m6A 3'UTR       27773535
chr3:133545986-133545987(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr3:133546042-133546043(-) m6A 3'UTR       24981863
chr3:133547267-133547268(-) m6A 3'UTR//intron       27773535
chr3:133547547-133547548(-) m6A 3'UTR//intron       27773535
chr3:133547677-133547678(-) m6A CDS//intron       27773535
chr3:133557029-133557030(-) m6A CDS//intron       24981863//27773535//27371828
chr3:133557041-133557042(-) m6A CDS//intron       24981863//27773535//27371828
chr3:133557063-133557064(-) m6A CDS//intron       24981863//27773535//27371828
chr3:133558364-133558365(-) m6A CDS//intron       24981863//27773535
chr3:133558413-133558414(-) m6A CDS//intron       27773535
chr3:133558440-133558441(-) m6A CDS//intron       27773535
chr3:133560163-133560164(-) m6A CDS//intron       27773535
chr3:133560214-133560215(-) m6A CDS//intron       27773535
chr3:133560460-133560461(-) m6A CDS//intron       27773535
chr3:133560476-133560477(-) m6A 5'UTR//CDS//intron       27773535
chr3:133604389-133604390(-) m6A CDS//intron       27773535
chr3:133614464-133614465(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536
chr3:133614484-133614485(-) m6A 5'UTR       24284625//24209618//25456834//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0067985
Exosome Blood     -
RAB6B
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0067985
Interactor2: RAB6B

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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