Detail Information

Basic Information:


  VIRBase ID:  

HHID00098868

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0067985 CCDC113
miRBase
Accession/Entrez ID		 hsa_circ_0067985 29070
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - HSPC065

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCDC113
chr16:58311125(+) A-I      intronic
chr16:58311150(+) A-I      intronic
chr16:58311158(+) A-I      intronic
chr16:58311162(+) A-I      intronic
chr16:58311137(+) A-I      intronic
chr16:58311136(+) A-I      intronic
chr16:58311133(+) A-I      intronic
chr16:58311132(+) A-I      intronic
chr16:58289509(+) A-I      intronic
chr16:58285457(+) A-I      intronic
chr16:58285453(+) A-I      intronic
chr16:58316052(+) A-I      3'UTR
chr16:58316042(+) A-I      3'UTR
chr16:58316070(+) A-I      3'UTR
chr16:58316030(+) A-I      3'UTR
chr16:58291836(+) A-I      intronic
chr16:58292788(+) A-I      intronic
chr16:58311214(+) A-I      intronic
chr16:58285435(+) A-I      intronic
chr16:58291756(+) A-I      intronic
chr16:58287048(+) A-I      intronic
chr16:58285558(+) A-I      intronic
chr16:58285349(+) A-I      intronic
chr16:58287062(+) A-I      intronic
chr16:58311216(+) A-I      intronic
chr16:58293163(+) A-I      intronic
chr16:58292762(+) A-I      intronic
chr16:58292794(+) A-I      intronic
chr16:58289643(+) A-I      intronic
chr16:58285557(+) A-I      intronic
chr16:58292802(+) A-I      intronic
chr16:58303155(+) A-I      intronic
chr16:58311307(+) A-I      intronic
chr16:58285570(+) A-I      intronic
chr16:58284414(+) A-I      intronic
chr16:58300037(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCDC113
chr16:58287931-58287932(+) m6A CDS//intron       24209618//24981863
chr16:58287941-58287942(+) m6A CDS//intron       24209618//24981863
chr16:58287972-58287973(+) m6A CDS//intron       24209618//24981863
chr16:58301472-58301473(+) m6A CDS       24981863
chr16:58312491-58312492(+) m6A CDS       24981863
chr16:58313883-58313884(+) m6A 3'UTR       24981863
chr16:58314046-58314047(+) m6A 3'UTR       24981863
chr16:58314058-58314059(+) m6A 3'UTR       24981863
chr16:58314126-58314127(+) m6A 3'UTR       24981863
chr16:58314149-58314150(+) m6A 3'UTR       24981863
chr16:58314164-58314165(+) m6A 3'UTR       24981863
chr16:58314561-58314562(+) m6A 3'UTR       24981863
chr16:58314596-58314597(+) m6A 3'UTR       24981863
chr16:58314608-58314609(+) m6A 3'UTR       24981863
chr16:58314621-58314622(+) m6A 3'UTR       24981863
chr16:58314673-58314674(+) m6A 3'UTR       24981863
chr16:58314698-58314699(+) m6A 3'UTR       24981863
chr16:58315610-58315611(+) m6A 3'UTR       24981863
chr16:58315616-58315617(+) m6A 3'UTR       24981863
chr16:58315648-58315649(+) m6A 3'UTR       24981863
chr16:58315657-58315658(+) m6A 3'UTR       24981863
chr16:58315666-58315667(+) m6A 3'UTR       24981863
chr16:58315721-58315722(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0067985
Exosome Blood     -
CCDC113
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0067985
Interactor2: CCDC113

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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