Detail Information

Basic Information:


  VIRBase ID:  

HHID00098863

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0067985 ABLIM3
miRBase
Accession/Entrez ID		 hsa_circ_0067985 22885
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - HMFN1661

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ABLIM3
chr5:148572138(+) A-I      intronic
chr5:148570198(+) A-I      intronic
chr5:148632760(+) A-I      intronic
chr5:148632762(+) A-I      intronic
chr5:148632766(+) A-I      intronic
chr5:148632786(+) A-I      intronic
chr5:148632815(+) A-I      intronic
chr5:148632816(+) A-I      intronic
chr5:148632817(+) A-I      intronic
chr5:148632855(+) A-I      intronic
chr5:148632830(+) A-I      intronic
chr5:148632814(+) A-I      intronic
chr5:148632802(+) A-I      intronic
chr5:148634784(+) A-I      intronic
chr5:148634796(+) A-I      intronic
chr5:148634696(+) A-I      intronic
chr5:148634826(+) A-I      intronic
chr5:148634667(+) A-I      intronic
chr5:148634717(+) A-I      intronic
chr5:148634708(+) A-I      intronic
chr5:148634678(+) A-I      intronic
chr5:148632943(+) A-I      intronic
chr5:148632929(+) A-I      intronic
chr5:148634668(+) A-I      intronic
chr5:148632901(+) A-I      intronic
chr5:148634694(+) A-I      intronic
chr5:148632759(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ABLIM3
chr5:148596531(+) A-I exon CDS    19478186

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ABLIM3
chr5:148521402-148521403(+) m6A 5'UTR//intron       24981863
chr5:148521494-148521495(+) m6A 5'UTR//intron       -
chr5:148521505-148521506(+) m6A 5'UTR//intron       -
chr5:148521551-148521552(+) m6A 5'UTR//intron       -
chr5:148632383-148632384(+) m6A 3'UTR//CDS//exon       24981863
chr5:148632388-148632389(+) m6A 3'UTR//CDS//exon       24981863
chr5:148637939-148637940(+) m6A 3'UTR//CDS//exon//intron       24981863
chr5:148638059-148638060(+) m6A 3'UTR//exon//intron       24981863
chr5:148639222-148639223(+) m6A 3'UTR       -
chr5:148639259-148639260(+) m6A 3'UTR       24209618
chr5:148639324-148639325(+) m6A 3'UTR       24209618//24981863//27773535
chr5:148639414-148639415(+) m6A 3'UTR       24284625//24209618//24981863//27773535
chr5:148639429-148639430(+) m6A 3'UTR       24284625//24209618//24981863//27773535
chr5:148639526-148639527(+) m6A 3'UTR       24209618//24981863//27773535
chr5:148639581-148639582(+) m6A 3'UTR       24209618//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0067985
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0067985
Interactor2: ABLIM3

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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