Detail Information

Basic Information:


  VIRBase ID:  

HHID00098643

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0002248 C6orf132
miRBase
Accession/Entrez ID		 hsa_circ_0002248 647024
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - bA7K24.2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C6orf132
chr6:42083832(-) A-I      intronic
chr6:42094012(-) A-I      intronic
chr6:42093986(-) A-I      intronic
chr6:42093987(-) A-I      intronic
chr6:42093997(-) A-I      intronic
chr6:42083843(-) A-I      intronic
chr6:42083816(-) A-I      intronic
chr6:42094089(-) A-I      intronic
chr6:42079115(-) A-I      intronic
chr6:42083861(-) A-I      intronic
chr6:42083867(-) A-I      intronic
chr6:42093943(-) A-I      intronic
chr6:42079091(-) A-I      intronic
chr6:42069964(-) A-I      3'UTR
chr6:42094345(-) A-I      3'UTR
chr6:42070191(-) A-I      3'UTR
chr6:42070070(-) A-I      3'UTR
chr6:42069963(-) A-I      3'UTR
chr6:42070147(-) A-I      3'UTR
chr6:42070144(-) A-I      3'UTR
chr6:42070138(-) A-I      3'UTR
chr6:42094499(-) A-I      3'UTR
chr6:42094498(-) A-I      3'UTR
chr6:42094481(-) A-I      3'UTR
chr6:42070235(-) A-I      3'UTR
chr6:42094336(-) A-I      3'UTR
chr6:42094323(-) A-I      3'UTR
chr6:42070057(-) A-I      3'UTR
chr6:42070103(-) A-I      3'UTR
chr6:42070061(-) A-I      3'UTR
chr6:42070062(-) A-I      3'UTR
chr6:42083220(-) A-I      intronic
chr6:42094542(-) A-I      NonSyn:Met->Val
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C6orf132
chr6:42070147(-) A-I exon 3'UTR    21960545
chr6:42094345(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C6orf132
chr6:42070969-42070970(-) m6A 3'UTR       25456834
chr6:42071100-42071101(-) m6A 3'UTR       25456834//24981863
chr6:42071106-42071107(-) m6A 3'UTR       25456834//24981863
chr6:42071168-42071169(-) m6A 3'UTR       25456834//24981863
chr6:42071226-42071227(-) m6A 3'UTR       25456834//24981863
chr6:42071236-42071237(-) m6A 3'UTR       25456834//24981863
chr6:42071284-42071285(-) m6A 3'UTR       25456834//24981863//22575960
chr6:42071329-42071330(-) m6A 3'UTR       25456834//24981863
chr6:42071359-42071360(-) m6A 3'UTR       25456834//24981863
chr6:42071386-42071387(-) m6A 3'UTR       25456834//24981863
chr6:42071466-42071467(-) m6A 3'UTR       25456834
chr6:42072593-42072594(-) m6A CDS       25456834//24981863
chr6:42072605-42072606(-) m6A CDS       25456834//24981863
chr6:42072734-42072735(-) m6A CDS       25456834//24981863
chr6:42072843-42072844(-) m6A CDS       25456834//24981863
chr6:42072935-42072936(-) m6A CDS       25456834//24981863
chr6:42073183-42073184(-) m6A CDS       25456834//24981863
chr6:42073377-42073378(-) m6A CDS       25456834//24981863
chr6:42073520-42073521(-) m6A CDS       25456834//24981863
chr6:42073735-42073736(-) m6A CDS       25456834//24981863
chr6:42073822-42073823(-) m6A CDS       25456834//24981863
chr6:42073979-42073980(-) m6A CDS       25456834//24981863
chr6:42073994-42073995(-) m6A CDS       25456834//24981863
chr6:42074031-42074032(-) m6A CDS       25456834//24981863
chr6:42074084-42074085(-) m6A CDS       25456834//24981863
chr6:42074109-42074110(-) m6A CDS       25456834//24981863
chr6:42074195-42074196(-) m6A CDS       25456834//24981863
chr6:42074261-42074262(-) m6A CDS       25456834//24981863
chr6:42074270-42074271(-) m6A CDS       25456834//24981863
chr6:42074294-42074295(-) m6A CDS       25456834//24981863
chr6:42074317-42074318(-) m6A CDS       25456834//24981863
chr6:42074323-42074324(-) m6A CDS       25456834//24981863
chr6:42074352-42074353(-) m6A CDS       25456834
chr6:42074484-42074485(-) m6A CDS       25456834
chr6:42074567-42074568(-) m6A CDS       25456834
chr6:42074585-42074586(-) m6A CDS       25456834
chr6:42074715-42074716(-) m6A CDS       25456834
chr6:42075112-42075113(-) m6A CDS       25456834
chr6:42075181-42075182(-) m6A CDS       25456834
chr6:42075191-42075192(-) m6A CDS       25456834
chr6:42110261-42110262(-) m6A 5'UTR       25456834//24981863
chr6:42110289-42110290(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0002248
Exosome Blood     -
C6orf132
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0002248
Interactor2: C6orf132

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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