Detail Information

Basic Information:


  VIRBase ID:  

HHID00098638

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0002248 KNOP1
miRBase
Accession/Entrez ID		 hsa_circ_0002248 400506
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - 101F10.1//C16orf88//FAM191A//TSG118

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KNOP1
chr16:19721487(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KNOP1
chr16:19714631-19714632(-) m6A 3'UTR       -
chr16:19714641-19714642(-) m6A 3'UTR       -
chr16:19714652-19714653(-) m6A 3'UTR       -
chr16:19714748-19714749(-) m6A 3'UTR       -
chr16:19714909-19714910(-) m6A 3'UTR       27773535
chr16:19715056-19715057(-) m6A 3'UTR       27773535
chr16:19715115-19715116(-) m6A 3'UTR       24981863//26404942//27773535
chr16:19715145-19715146(-) m6A 3'UTR       24981863//26404942//27773535
chr16:19715181-19715182(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr16:19715402-19715403(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr16:19715416-19715417(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr16:19715430-19715431(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr16:19715502-19715503(-) m6A 3'UTR       22608085
chr16:19715624-19715625(-) m6A 3'UTR       24209618
chr16:19715934-19715935(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr16:19715940-19715941(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr16:19715990-19715991(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19716118-19716119(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr16:19716149-19716150(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:19716168-19716169(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:19716205-19716206(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:19716391-19716392(-) m6A 3'UTR       24209618//24981863//22608085
chr16:19716431-19716432(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr16:19716439-19716440(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr16:19716616-19716617(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19716631-19716632(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19716656-19716657(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19716777-19716778(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr16:19716796-19716797(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr16:19717809-19717810(-) m6A 3'UTR       27773535
chr16:19717859-19717860(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19717879-19717880(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:19717900-19717901(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:19717954-19717955(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:19717980-19717981(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:19718005-19718006(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr16:19718071-19718072(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19718126-19718127(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr16:19718206-19718207(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr16:19718230-19718231(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19718352-19718353(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:19718454-19718455(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:19718474-19718475(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:19718489-19718490(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:19718496-19718497(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:19718539-19718540(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19721592-19721593(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:19721738-19721739(-) m6A exon//intron       22608085
chr16:19721844-19721845(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr16:19722697-19722698(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:19722748-19722749(-) m6A 5'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:19722758-19722759(-) m6A 5'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:19725452-19725453(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr16:19725480-19725481(-) m1A CDS//exon       26863196
chr16:19725736-19725737(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:19725781-19725782(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:19725812-19725813(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:19725854-19725855(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:19725878-19725879(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:19725907-19725908(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:19725933-19725934(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr16:19725949-19725950(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr16:19725956-19725957(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr16:19725966-19725967(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr16:19726080-19726081(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr16:19726101-19726102(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr16:19726108-19726109(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr16:19726259-19726260(-) m6A CDS//exon       24981863//27773535//22608085
chr16:19726278-19726279(-) m6A CDS//exon       25456834//24981863//26404942//27773535//27371828//22608085
chr16:19726285-19726286(-) m6A CDS//exon       25456834//24981863//26404942//27773535//27371828//22608085
chr16:19726302-19726303(-) m1A CDS//exon       26863196
chr16:19726331-19726332(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr16:19726344-19726345(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr16:19729092-19729093(-) m6A 5'UTR//intron       25456834
chr16:19729284-19729285(-) m6A 5'UTR//intron       25456834
chr16:19729536-19729537(-) m6A 5'UTR//exon       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0002248
Exosome Blood     -
KNOP1
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0002248
Interactor2: KNOP1

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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