Detail Information

Basic Information:


  VIRBase ID:  

HHID00098632

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0002248 SKA2
miRBase
Accession/Entrez ID		 hsa_circ_0002248 348235
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - FAM33A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SKA2
chr17:57222269(-) A-I      intronic
chr17:57207068(-) A-I      intronic
chr17:57207059(-) A-I      intronic
chr17:57207016(-) A-I      intronic
chr17:57207067(-) A-I      intronic
chr17:57207002(-) A-I      intronic
chr17:57206997(-) A-I      intronic
chr17:57194906(-) A-I      intronic
chr17:57194888(-) A-I      intronic
chr17:57194850(-) A-I      intronic
chr17:57194847(-) A-I      intronic
chr17:57194371(-) A-I      intronic
chr17:57194323(-) A-I      intronic
chr17:57194901(-) A-I      intronic
chr17:57206492(-) A-I      intronic
chr17:57209604(-) A-I      intronic
chr17:57214578(-) A-I      intronic
chr17:57221002(-) A-I      intronic
chr17:57193093(-) A-I      intronic
chr17:57193052(-) A-I      intronic
chr17:57212390(-) A-I      intronic
chr17:57212789(-) A-I      intronic
chr17:57213307(-) A-I      intronic
chr17:57213399(-) A-I      intronic
chr17:57215959(-) A-I      intronic
chr17:57215963(-) A-I      intronic
chr17:57215964(-) A-I      intronic
chr17:57216035(-) A-I      intronic
chr17:57216500(-) A-I      intronic
chr17:57216554(-) A-I      intronic
chr17:57216569(-) A-I      intronic
chr17:57216732(-) A-I      intronic
chr17:57220166(-) A-I      intronic
chr17:57195391(-) A-I      intronic
chr17:57195463(-) A-I      intronic
chr17:57195527(-) A-I      intronic
chr17:57197381(-) A-I      intronic
chr17:57197398(-) A-I      intronic
chr17:57197408(-) A-I      intronic
chr17:57220194(-) A-I      intronic
chr17:57220205(-) A-I      intronic
chr17:57197447(-) A-I      intronic
chr17:57220206(-) A-I      intronic
chr17:57197449(-) A-I      intronic
chr17:57194356(-) A-I      intronic
chr17:57194455(-) A-I      intronic
chr17:57194881(-) A-I      intronic
chr17:57194985(-) A-I      intronic
chr17:57194989(-) A-I      intronic
chr17:57195036(-) A-I      intronic
chr17:57195037(-) A-I      intronic
chr17:57197450(-) A-I      intronic
chr17:57197474(-) A-I      intronic
chr17:57197506(-) A-I      intronic
chr17:57199877(-) A-I      intronic
chr17:57220871(-) A-I      intronic
chr17:57220897(-) A-I      intronic
chr17:57221061(-) A-I      intronic
chr17:57221108(-) A-I      intronic
chr17:57221256(-) A-I      intronic
chr17:57221274(-) A-I      intronic
chr17:57221351(-) A-I      intronic
chr17:57221435(-) A-I      intronic
chr17:57222409(-) A-I      intronic
chr17:57224019(-) A-I      intronic
chr17:57224053(-) A-I      intronic
chr17:57224154(-) A-I      intronic
chr17:57224227(-) A-I      intronic
chr17:57224306(-) A-I      intronic
chr17:57225734(-) A-I      intronic
chr17:57225754(-) A-I      intronic
chr17:57199799(-) A-I      intronic
chr17:57226943(-) A-I      intronic
chr17:57200293(-) A-I      intronic
chr17:57200297(-) A-I      intronic
chr17:57200298(-) A-I      intronic
chr17:57193023(-) A-I      intronic
chr17:57201002(-) A-I      intronic
chr17:57201012(-) A-I      intronic
chr17:57201625(-) A-I      intronic
chr17:57201653(-) A-I      intronic
chr17:57202362(-) A-I      intronic
chr17:57202845(-) A-I      intronic
chr17:57202850(-) A-I      intronic
chr17:57202939(-) A-I      intronic
chr17:57202949(-) A-I      intronic
chr17:57203031(-) A-I      intronic
chr17:57203041(-) A-I      intronic
chr17:57203043(-) A-I      intronic
chr17:57204694(-) A-I      intronic
chr17:57204925(-) A-I      intronic
chr17:57204926(-) A-I      intronic
chr17:57204966(-) A-I      intronic
chr17:57205794(-) A-I      intronic
chr17:57205820(-) A-I      intronic
chr17:57205839(-) A-I      intronic
chr17:57205886(-) A-I      intronic
chr17:57205910(-) A-I      intronic
chr17:57206962(-) A-I      intronic
chr17:57207052(-) A-I      intronic
chr17:57207116(-) A-I      intronic
chr17:57209529(-) A-I      intronic
chr17:57209551(-) A-I      intronic
chr17:57209862(-) A-I      intronic
chr17:57195372(-) A-I      intronic
chr17:57226817(-) A-I      intronic
chr17:57195058(-) A-I      intronic
chr17:57195061(-) A-I      intronic
chr17:57220953(-) A-I      intronic
chr17:57225779(-) A-I      intronic
chr17:57210596(-) A-I      intronic
chr17:57212334(-) A-I      intronic
chr17:57212389(-) A-I      intronic
chr17:57224109(-) A-I      intronic
chr17:57209678(-) A-I      intronic
chr17:57204861(-) A-I      intronic
chr17:57225320(-) A-I      intronic
chr17:57225098(-) A-I      intronic
chr17:57224118(-) A-I      intronic
chr17:57212957(-) A-I      intronic
chr17:57224115(-) A-I      intronic
chr17:57210512(-) A-I      intronic
chr17:57201711(-) A-I      intronic
chr17:57201681(-) A-I      intronic
chr17:57216601(-) A-I      intronic
chr17:57218538(-) A-I      intronic
chr17:57222295(-) A-I      intronic
chr17:57199754(-) A-I      intronic
chr17:57225024(-) A-I      intronic
chr17:57201061(-) A-I      intronic
chr17:57194315(-) A-I      intronic
chr17:57200035(-) A-I      intronic
chr17:57201577(-) A-I      intronic
chr17:57222296(-) A-I      intronic
chr17:57227979(-) A-I      intronic
chr17:57224437(-) A-I      intronic
chr17:57193520(-) A-I      intronic
chr17:57225844(-) A-I      intronic
chr17:57225399(-) A-I      intronic
chr17:57204871(-) A-I      intronic
chr17:57201550(-) A-I      intronic
chr17:57204661(-) A-I      intronic
chr17:57201578(-) A-I      intronic
chr17:57221369(-) A-I      intronic
chr17:57225398(-) A-I      intronic
chr17:57215952(-) A-I      intronic
chr17:57218870(-) A-I      intronic
chr17:57199968(-) A-I      intronic
chr17:57204985(-) A-I      intronic
chr17:57226151(-) A-I      intronic
chr17:57224055(-) A-I      intronic
chr17:57200676(-) A-I      intronic
chr17:57224094(-) A-I      intronic
chr17:57226942(-) A-I      intronic
chr17:57194360(-) A-I      intronic
chr17:57224060(-) A-I      intronic
chr17:57204931(-) A-I      intronic
chr17:57226748(-) A-I      intronic
chr17:57221434(-) A-I      intronic
chr17:57216600(-) A-I      intronic
chr17:57226650(-) A-I      intronic
chr17:57197888(-) A-I      intronic
chr17:57213299(-) A-I      intronic
chr17:57198324(-) A-I      intronic
chr17:57200027(-) A-I      intronic
chr17:57209917(-) A-I      intronic
chr17:57223846(-) A-I      intronic
chr17:57206615(-) A-I      intronic
chr17:57207001(-) A-I      intronic
chr17:57201038(-) A-I      intronic
chr17:57201624(-) A-I      intronic
chr17:57215966(-) A-I      intronic
chr17:57200685(-) A-I      intronic
chr17:57218194(-) A-I      intronic
chr17:57223157(-) A-I      intronic
chr17:57220729(-) A-I      intronic
chr17:57210393(-) A-I      intronic
chr17:57218902(-) A-I      intronic
chr17:57223694(-) A-I      intronic
chr17:57225450(-) A-I      intronic
chr17:57204946(-) A-I      intronic
chr17:57205943(-) A-I      intronic
chr17:57213404(-) A-I      intronic
chr17:57224101(-) A-I      intronic
chr17:57225719(-) A-I      intronic
chr17:57199824(-) A-I      intronic
chr17:57209871(-) A-I      intronic
chr17:57224164(-) A-I      intronic
chr17:57207049(-) A-I      intronic
chr17:57209595(-) A-I      intronic
chr17:57210536(-) A-I      intronic
chr17:57206529(-) A-I      intronic
chr17:57206566(-) A-I      intronic
chr17:57195614(-) A-I      intronic
chr17:57202602(-) A-I      intronic
chr17:57213324(-) A-I      intronic
chr17:57216636(-) A-I      intronic
chr17:57201698(-) A-I      intronic
chr17:57220858(-) A-I      intronic
chr17:57220277(-) A-I      intronic
chr17:57199692(-) A-I      intronic
chr17:57224419(-) A-I      intronic
chr17:57201779(-) A-I      intronic
chr17:57204928(-) A-I      intronic
chr17:57227532(-) A-I      intronic
chr17:57221516(-) A-I      intronic
chr17:57225918(-) A-I      intronic
chr17:57209828(-) A-I      intronic
chr17:57200752(-) A-I      intronic
chr17:57199850(-) A-I      intronic
chr17:57213587(-) A-I      intronic
chr17:57223852(-) A-I      intronic
chr17:57200128(-) A-I      intronic
chr17:57201048(-) A-I      intronic
chr17:57210502(-) A-I      intronic
chr17:57203011(-) A-I      intronic
chr17:57225793(-) A-I      intronic
chr17:57212732(-) A-I      intronic
chr17:57224320(-) A-I      intronic
chr17:57223132(-) A-I      intronic
chr17:57226770(-) A-I      intronic
chr17:57226052(-) A-I      intronic
chr17:57202431(-) A-I      intronic
chr17:57202400(-) A-I      intronic
chr17:57214194(-) A-I      intronic
chr17:57200738(-) A-I      intronic
chr17:57220831(-) A-I      intronic
chr17:57227991(-) A-I      intronic
chr17:57223156(-) A-I      intronic
chr17:57218869(-) A-I      intronic
chr17:57205900(-) A-I      intronic
chr17:57226815(-) A-I      intronic
chr17:57222438(-) A-I      intronic
chr17:57218257(-) A-I      intronic
chr17:57224436(-) A-I      intronic
chr17:57207883(-) A-I      intronic
chr17:57226651(-) A-I      intronic
chr17:57223282(-) A-I      intronic
chr17:57204951(-) A-I      intronic
chr17:57221417(-) A-I      intronic
chr17:57190543(-) A-I      intronic
chr17:57199848(-) A-I      intronic
chr17:57224456(-) A-I      intronic
chr17:57212727(-) A-I      intronic
chr17:57200291(-) A-I      intronic
chr17:57200317(-) A-I      intronic
chr17:57218585(-) A-I      intronic
chr17:57206627(-) A-I      intronic
chr17:57201560(-) A-I      intronic
chr17:57210476(-) A-I      intronic
chr17:57218032(-) A-I      intronic
chr17:57202407(-) A-I      intronic
chr17:57216524(-) A-I      intronic
chr17:57198257(-) A-I      intronic
chr17:57220866(-) A-I      intronic
chr17:57197434(-) A-I      intronic
chr17:57214652(-) A-I      intronic
chr17:57220928(-) A-I      intronic
chr17:57204942(-) A-I      intronic
chr17:57220703(-) A-I      intronic
chr17:57223093(-) A-I      intronic
chr17:57199806(-) A-I      intronic
chr17:57218503(-) A-I      intronic
chr17:57218279(-) A-I      intronic
chr17:57213820(-) A-I      intronic
chr17:57218861(-) A-I      intronic
chr17:57204927(-) A-I      intronic
chr17:57231271(-) A-I      intronic
chr17:57218437(-) A-I      intronic
chr17:57225473(-) A-I      intronic
chr17:57224277(-) A-I      intronic
chr17:57222431(-) A-I      intronic
chr17:57220076(-) A-I      intronic
chr17:57204847(-) A-I      intronic
chr17:57194357(-) A-I      intronic
chr17:57210535(-) A-I      intronic
chr17:57197855(-) A-I      intronic
chr17:57205020(-) A-I      intronic
chr17:57200989(-) A-I      intronic
chr17:57212775(-) A-I      intronic
chr17:57231300(-) A-I      intronic
chr17:57225474(-) A-I      intronic
chr17:57222410(-) A-I      intronic
chr17:57198346(-) A-I      intronic
chr17:57224150(-) A-I      intronic
chr17:57213294(-) A-I      intronic
chr17:57205865(-) A-I      intronic
chr17:57199617(-) A-I      intronic
chr17:57212774(-) A-I      intronic
chr17:57202978(-) A-I      intronic
chr17:57226134(-) A-I      intronic
chr17:57199584(-) A-I      intronic
chr17:57200770(-) A-I      intronic
chr17:57224326(-) A-I      intronic
chr17:57216502(-) A-I      intronic
chr17:57219820(-) A-I      intronic
chr17:57223777(-) A-I      intronic
chr17:57218836(-) A-I      intronic
chr17:57222289(-) A-I      intronic
chr17:57222322(-) A-I      intronic
chr17:57206570(-) A-I      intronic
chr17:57210595(-) A-I      intronic
chr17:57200148(-) A-I      intronic
chr17:57220693(-) A-I      intronic
chr17:57199664(-) A-I      intronic
chr17:57204846(-) A-I      intronic
chr17:57212893(-) A-I      intronic
chr17:57224123(-) A-I      intronic
chr17:57225341(-) A-I      intronic
chr17:57200959(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SKA2
chr17:57194315(-) A-I intron -    22327324
chr17:57210502(-) A-I intron -    22327324
chr17:57199707(-) T-C intron -    22484847
chr17:57201779(-) A-G intron -    22484847
chr17:57210502(-) A-G intron -    22484847
chr17:57210512(-) A-G intron -    22484847
chr17:57223157(-) A-G intron -    22484847
chr17:57225918(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SKA2
chr17:57187332-57187333(-) m6A 3'UTR       27773535
chr17:57187377-57187378(-) m6A 3'UTR       27773535
chr17:57187440-57187441(-) m6A 3'UTR       27773535
chr17:57189218-57189219(-) m6A 3'UTR       27773535
chr17:57189628-57189629(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828//22608085
chr17:57189678-57189679(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828//22608085
chr17:57196690-57196691(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//27371828//22608085
chr17:57196703-57196704(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//27371828//22608085
chr17:57196723-57196724(-) m6A 3'UTR//CDS//intron       24981863//27773535//22608085
chr17:57196781-57196782(-) m6A 3'UTR//CDS//intron       27773535
chr17:57196801-57196802(-) m6A 3'UTR//CDS//intron       27773535
chr17:57206800-57206801(-) Gm intron       16381836
chr17:57208667-57208668(-) m6A CDS//intron       24209618//24981863
chr17:57229153-57229154(-) m6A 5'UTR//intron       24209618//24981863
chr17:57232325-57232326(-) m6A CDS//intron       24209618//24981863
chr17:57232383-57232384(-) m6A CDS//intron       24284625//24209618//24981863
chr17:57232404-57232405(-) m6A CDS//intron       24284625//24209618//24981863
chr17:57232497-57232498(-) m6A 5'UTR//CDS//exon       24284625//24209618//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0002248
Exosome Blood     -
SKA2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0002248
Interactor2: SKA2

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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