Detail Information

Basic Information:


  VIRBase ID:  

HHID00098627

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0002248 CCDC85C
miRBase
Accession/Entrez ID		 hsa_circ_0002248 317762
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCDC85C
chr14:100000461(-) A-I      intronic
chr14:99999314(-) A-I      intronic
chr14:99999313(-) A-I      intronic
chr14:99999283(-) A-I      intronic
chr14:100000434(-) A-I      intronic
chr14:99999342(-) A-I      intronic
chr14:100000654(-) A-I      intronic
chr14:100000476(-) A-I      intronic
chr14:99999256(-) A-I      intronic
chr14:99999312(-) A-I      intronic
chr14:100000448(-) A-I      intronic
chr14:99999315(-) A-I      intronic
chr14:99999332(-) A-I      intronic
chr14:99999318(-) A-I      intronic
chr14:100000633(-) A-I      intronic
chr14:100022921(-) A-I      intronic
chr14:99999392(-) A-I      intronic
chr14:100050476(-) A-I      intronic
chr14:99999165(-) A-I      intronic
chr14:100019879(-) A-I      intronic
chr14:100022984(-) A-I      intronic
chr14:99999294(-) A-I      intronic
chr14:100000580(-) A-I      intronic
chr14:100043847(-) A-I      intronic
chr14:100023143(-) A-I      intronic
chr14:100000605(-) A-I      intronic
chr14:100061705(-) A-I      intronic
chr14:100043717(-) A-I      intronic
chr14:100043646(-) A-I      intronic
chr14:100000449(-) A-I      intronic
chr14:100000544(-) A-I      intronic
chr14:100051350(-) A-I      intronic
chr14:100000657(-) A-I      intronic
chr14:100000667(-) A-I      intronic
chr14:100043565(-) A-I      intronic
chr14:100000610(-) A-I      intronic
chr14:100000685(-) A-I      intronic
chr14:100000641(-) A-I      intronic
chr14:99999292(-) A-I      intronic
chr14:100000609(-) A-I      intronic
chr14:99999346(-) A-I      intronic
chr14:100051349(-) A-I      intronic
chr14:100043647(-) A-I      intronic
chr14:100000436(-) A-I      intronic
chr14:100044821(-) A-I      intronic
chr14:100051208(-) A-I      intronic
chr14:100051332(-) A-I      intronic
chr14:100050503(-) A-I      intronic
chr14:100043788(-) A-I      intronic
chr14:100049676(-) A-I      intronic
chr14:100044822(-) A-I      intronic
chr14:100043798(-) A-I      intronic
chr14:100061695(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCDC85C
chr14:100039071-100039072(-) m6A CDS//intron       27371828//27773536
chr14:100039088-100039089(-) m6A CDS//intron       27371828//27773536
chr14:100039096-100039097(-) m6A CDS//intron       27371828//27773536
chr14:100039128-100039129(-) m6A 5'UTR//intron       27371828//27773536
chr14:100069874-100069875(-) m6A CDS       24209618//25456834//27371828//27773536
chr14:100070075-100070076(-) m6A CDS       24284625//24209618//27371828//27773536
chr14:100070126-100070127(-) m6A CDS       24284625//24209618//24981863//27371828//27773536
chr14:99969293-99969294(-) m6A 3'UTR       -
chr14:99969387-99969388(-) m6A 3'UTR       -
chr14:99976571-99976572(-) m6A 3'UTR       -
chr14:99976672-99976673(-) m6A 3'UTR       -
chr14:99976693-99976694(-) m6A 3'UTR       -
chr14:99976720-99976721(-) m6A 3'UTR       -
chr14:99976805-99976806(-) m6A 3'UTR       -
chr14:99976964-99976965(-) m6A 3'UTR       -
chr14:99977608-99977609(-) m6A 3'UTR       27773535
chr14:99977715-99977716(-) m6A 3'UTR       27773535
chr14:99977841-99977842(-) m6A 3'UTR       27773535
chr14:99978429-99978430(-) m6A 3'UTR       27773535
chr14:99978454-99978455(-) m6A 3'UTR       27773535
chr14:99978466-99978467(-) m6A 3'UTR       27773535
chr14:99978488-99978489(-) m6A 3'UTR       27773535
chr14:99978503-99978504(-) m6A 3'UTR       27773535
chr14:99980242-99980243(-) m6A 3'UTR       24981863
chr14:99981067-99981068(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981166-99981167(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981172-99981173(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981204-99981205(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981253-99981254(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981467-99981468(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981505-99981506(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981516-99981517(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981559-99981560(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99981604-99981605(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr14:99982567-99982568(-) m6A CDS       24284625//24209618//27371828//27773536//22575960
chr14:99982582-99982583(-) m6A CDS       24284625//27371828//27773536
chr14:99982597-99982598(-) m6A CDS       24284625//27371828//27773536
chr14:99983457-99983458(-) m6A 5'UTR//CDS//intron       24284625//27371828//27773536
chr14:99988482-99988483(-) m6A 5'UTR//CDS       24284625//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0002248
Exosome Blood     -
CCDC85C
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0002248
Interactor2: CCDC85C

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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