Detail Information

Basic Information:


  VIRBase ID:  

HHID00098399

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0002248 LIPG
miRBase
Accession/Entrez ID		 hsa_circ_0002248 9388
Organism Homo sapiens Homo sapiens
Category circRNA mRNA
Alias - EDL//EL//PRO719

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LIPG
chr18:47113554(+) A-I      intronic
chr18:47116014(+) A-I      intronic
chr18:47113555(+) A-I      intronic
chr18:47116024(+) A-I      intronic
chr18:47116033(+) A-I      intronic
chr18:47113565(+) A-I      intronic
chr18:47107428(+) A-I      intronic
chr18:47114677(+) A-I      intronic
chr18:47114805(+) A-I      intronic
chr18:47114905(+) A-I      intronic
chr18:47115885(+) A-I      intronic
chr18:47115945(+) A-I      intronic
chr18:47113550(+) A-I      intronic
chr18:47113845(+) A-I      intronic
chr18:47113652(+) A-I      intronic
chr18:47113457(+) A-I      intronic
chr18:47107550(+) A-I      intronic
chr18:47114420(+) A-I      intronic
chr18:47114771(+) A-I      intronic
chr18:47113729(+) A-I      intronic
chr18:47113871(+) A-I      intronic
chr18:47114237(+) A-I      intronic
chr18:47107545(+) A-I      intronic
chr18:47107482(+) A-I      intronic
chr18:47114782(+) A-I      intronic
chr18:47106418(+) A-I      intronic
chr18:47106393(+) A-I      intronic
chr18:47113384(+) A-I      intronic
chr18:47113410(+) A-I      intronic
chr18:47114930(+) A-I      intronic
chr18:47116059(+) A-I      intronic
chr18:47113376(+) A-I      intronic
chr18:47114360(+) A-I      intronic
chr18:47107427(+) A-I      intronic
chr18:47102348(+) A-I      intronic
chr18:47106405(+) A-I      intronic
chr18:47107559(+) A-I      intronic
chr18:47113667(+) A-I      intronic
chr18:47114434(+) A-I      intronic
chr18:47115932(+) A-I      intronic
chr18:47114833(+) A-I      intronic
chr18:47107387(+) A-I      intronic
chr18:47106264(+) A-I      intronic
chr18:47114880(+) A-I      intronic
chr18:47114730(+) A-I      intronic
chr18:47113685(+) A-I      intronic
chr18:47114795(+) A-I      intronic
chr18:47114286(+) A-I      intronic
chr18:47115853(+) A-I      intronic
chr18:47113570(+) A-I      intronic
chr18:47115855(+) A-I      intronic
chr18:47106367(+) A-I      intronic
chr18:47113818(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LIPG
chr18:47087396-47087397(+) m6A 5'UTR       25456834
chr18:47087441-47087442(+) m6A 5'UTR       25456834
chr18:47087487-47087488(+) m6A 5'UTR       25456834
chr18:47087544-47087545(+) m6A 5'UTR       25456834
chr18:47087571-47087572(+) m6A 5'UTR       25456834
chr18:47087694-47087695(+) m6A 5'UTR       25456834
chr18:47116971-47116972(+) m6A 3'UTR//exon       25456834
chr18:47117021-47117022(+) m6A 3'UTR//exon       25456834//24981863
chr18:47117047-47117048(+) m6A 3'UTR//exon       25456834//24981863
chr18:47117064-47117065(+) m6A 3'UTR//exon       25456834//24981863
chr18:47117114-47117115(+) m6A 3'UTR//exon       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0002248
Exosome Blood     -
LIPG
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0002248
Interactor2: LIPG

Evidence Support:


Weak-Evidence Illumina sequencing
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Calu-3 cells Interactor2 expression None
Description The mRNA-circRNA pairs with strong positive correlations were defined as those having r >0.7 and cP <0.05.

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